Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,248,322 – 3,248,417 |
Length | 95 |
Max. P | 0.651942 |
Location | 3,248,322 – 3,248,417 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.48 |
Mean single sequence MFE | -24.15 |
Consensus MFE | -12.83 |
Energy contribution | -12.92 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.37 |
Mean z-score | -1.70 |
Structure conservation index | 0.53 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3248322 95 + 27905053 AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUCAAAGACAAACGA----CGGCCACAAAAUA--U-AAAAA ......................((.((((..(((((.(((.......))).))))).....(((..........))----))))).)).....--.-..... ( -23.20) >DroGri_CAF1 1078 97 + 1 AUUUGGAUAAUCAUUCCUUUGAUGCCUGUUGCUUACUGGCACGCAAAUCAAUGGAUGGUAAGGGUA-----AUUGAGUAACAGUCGCAGACUGCUUAAUCAU .........(((((.((.(((((...(((((((....)))).))).))))).))))))).......-----..(((.((((((((...))))).))).))). ( -21.90) >DroSec_CAF1 1736 95 + 1 AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAGACAAACGA----AAGCCACAAAAUA--U-ACAAA .......(((((.....((((.(((.(((..(((((.(((.......))).))))))))..............(..----..))))))))...--)-)))). ( -22.10) >DroSim_CAF1 2392 95 + 1 AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAAACAAACGA----AGGCCCCAAAAUA--U-ACAAA .......(((((..((....))((((((((.(((((.(((.......))).))))).....((.....))......----)))))))).....--)-)))). ( -30.70) >DroEre_CAF1 2016 95 + 1 AUCUGAAUUUUAACUCAUUUGAUGGAGCUUGCUCCAUGGCACGAAUUGCCCUGGAGGGUAAGUUAAGUGUAAGCAA----AGGCCGCAAAAUA--U-AACAA ......(((((......((((((((((....)))))).((((...((((((....)))))).....))))...)))----)......))))).--.-..... ( -23.00) >DroYak_CAF1 18151 95 + 1 AUCUGAAUUUUAACUCAUUCGAUGGAGCUUGCUCCAUGGCACGUAUUGCCCUGGAGGGUAAGUUAAAAUUUUACAA----AGGCCCCAAAACA--U-AACAA ....((((((((((.....(.((((((....)))))).)......((((((....)))))))))))))))).....----.............--.-..... ( -24.00) >consensus AUCUGAAUUGUAACUCAUUUGAUGGGGCCUGCUCCAUGGCACGAAUGGCCCUGGAGGGUAAGUAAAAAACAAACGA____AGGCCACAAAAUA__U_AAAAA .................((((((((((....))))))(((.......((((....))))..((.........))........))).))))............ (-12.83 = -12.92 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:15 2006