Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,246,594 – 3,246,698 |
Length | 104 |
Max. P | 0.853050 |
Location | 3,246,594 – 3,246,698 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.15 |
Mean single sequence MFE | -43.08 |
Consensus MFE | -31.66 |
Energy contribution | -32.92 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.28 |
Mean z-score | -2.00 |
Structure conservation index | 0.73 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3246594 104 + 27905053 UUAUCGGAAGGUCUCCAGGCACCAAUUGCUGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCUAUGUACUCCGA ...(((((..((((((.(((.(((.....)))..(((((......))))))))...))))))...(((((((..(((((.....)))))..))))))).))))) ( -45.30) >DroSec_CAF1 19 104 + 1 AUAUCCGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCUCGGAUCGUCUGGGCUCCAUGUACUCCGA .....((.((((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))))).)). ( -41.20) >DroSim_CAF1 673 104 + 1 AUAUCCGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCUCAUCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCCAUGUACUCCGA .....((.((((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))))).)). ( -44.20) >DroEre_CAF1 318 104 + 1 UUAACGGAUGCUCACCUGGCUCCAAGUGCCGGAGUGCAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAGCGUCUGGGCUCCAUGUAUUCCGA ....((((((((..(((((((.((.((((.((.......)))))).)).))))).))..)))).((((((((..(((((.....)))))..)))))))))))). ( -50.10) >DroYak_CAF1 16426 104 + 1 UUAGCGGAUGGUUUCCAGGCUCCAAGUGCCGGAGUACAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAACGCCUGGGCUCCAUGUACUCCGA ....((((((.((((((((((.((.((((.((.......)))))).)).)))).)))))).))..(((((((..(((((.....)))))..))))))).)))). ( -47.00) >DroPer_CAF1 13 101 + 1 ACAUCUGAA---UUGCGAGCACCGACAGCCGGAAUUGUACCGCACCUGAGGCCAUGGGAAGUGAUUGCUUGGUCCCAAGAGCAGCUCGGAGGCAUCUACUCAGA ...(((((.---.(((((...(((.....)))..)))))..((..((((((((.((((((((....)))...))))).).))..)))))..))......))))) ( -30.70) >consensus AUAUCGGAAGGUCUCCAGGCUCCAAUUGCCGGAGUGCAGCCGCACCUGCAGCCAUGGGAGGCACAUGCGUGGUCCCCGGAUCGUCUGGGCUCCAUGUACUCCGA ....((((..((((((.(((.......)))((..(((((......))))).))...))))))...(((((((..(((((.....)))))..))))))).)))). (-31.66 = -32.92 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:12 2006