Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,242,709 – 3,242,809 |
Length | 100 |
Max. P | 0.852117 |
Location | 3,242,709 – 3,242,809 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -18.61 |
Energy contribution | -18.50 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.09 |
Structure conservation index | 0.94 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3242709 100 + 27905053 AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU .(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60) >DroSec_CAF1 9765 100 + 1 AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU .(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60) >DroSim_CAF1 10047 100 + 1 AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU .(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60) >DroEre_CAF1 9910 100 + 1 AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU .(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60) >DroMoj_CAF1 11978 98 + 1 AGAAAGCAUCAGCUCCAAAGUUAUUAGAGCAAAAUUUUUGCCUUUGCCUAAGUAAUGGCCAAGUGCAUAUCU--CAGCACAUAUUGAGUUAUGACUUAAU .....((....((((.((.....)).))))........((((((.(((........))).))).))).....--..))....(((((((....))))))) ( -20.40) >DroPer_CAF1 9146 100 + 1 AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU .(((((.((((((((...........)))......))))))))))(((........))).((((.((((...(((((......))))).))))))))... ( -19.60) >consensus AGAAAGCGCAAACUCAAAAGUUAUUAGAGCAAAUUUUUGCCUUUUGCCUAAGUAAUGGCCAAGUGCAUAUCUCUCAGCACAUAUUGAGUUAUGACUUAAU ...(((((..(((((((..((((((((.(((((.........))))))).))))))......((((..........))))...))))))).)).)))... (-18.61 = -18.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:09 2006