Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,237,527 – 3,237,638 |
Length | 111 |
Max. P | 0.519284 |
Location | 3,237,527 – 3,237,638 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.74 |
Mean single sequence MFE | -30.06 |
Consensus MFE | -19.48 |
Energy contribution | -18.96 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.30 |
Mean z-score | -2.42 |
Structure conservation index | 0.65 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3237527 111 - 27905053 AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGGCGAAGAUUGAACGCAGCAACCAUAGAAGAAAUAUAAAUAAAC .(((.(((((..(((......((((((((((((....))))....(((((((.((((((......))))))..))))))).))))))))....)))..))))).))).... ( -31.30) >DroSec_CAF1 4807 111 - 1 AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAACUUUCGGUUACGCUCUUUGGUCCGGGCGAAGAUUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC ......((((..(((......((((((((((((....))))....(((((((.(((((........)))))..))))))).))))))))....)))..))))......... ( -29.00) >DroSim_CAF1 4852 111 - 1 AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGACAGAGAGUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC ......((((..(((......((((((((((((....))))........(((.(((((((((.......))))))))))))))))))))....)))..))))......... ( -33.30) >DroEre_CAF1 4797 110 - 1 AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCCCUAUUCAGCUUUUGGUUACGCUUCUUGGCCAGGGCCAAGAUUGAACGCGGCUGCCAUAAAG-AAAUAAAAAUAAAC ......((((..((((.((((((((....((...))....))))))))(((..(((.(((((((....)))))))......)))...))).)))).-.))))......... ( -27.30) >DroYak_CAF1 4923 111 - 1 AAUUAAUAUUGAUUUACUAAAGUUGUGGCGGCUCUUUAGUCAGCUUUUGGUCACGCUUUUUGGUCAGGGCCAAGAUUGAACGCAGCUACCAUGAAAAAAGUAAAAAUAAAC ............((((((....(..(((..(((......((((.((((((((..(((....)))...))))))))))))....)))..)))..)....))))))....... ( -29.40) >consensus AAUUAAUAUUGAUUUGCAAAAGUUGUUGCGGCUCUUUAGCCAGCUUUCGGUUACGCUCUUUGGUCAGGGCCAAGAUUGAACGCAGCAACCAUAGAAGAAAUAAAAAUAAAC ......((((..(((......((((((((((((....))))....(((((((..((((........))))...))))))).))))))))....)))..))))......... (-19.48 = -18.96 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:06 2006