Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,236,526 – 3,236,623 |
Length | 97 |
Max. P | 0.922490 |
Location | 3,236,526 – 3,236,623 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 89.49 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -19.42 |
Energy contribution | -20.74 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.07 |
Mean z-score | -1.88 |
Structure conservation index | 0.82 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3236526 97 - 27905053 GCAGAAUCAUUUGAAUUGCAAAACAAACACGAGAGCGUUGACGACAUCGGCCUAUAUAACUAUAUAUAU------CUAUACUCGUUGGACGGGAGUCCAGCUA ((((..((....)).))))...........(((...(((((.....))))).((((((....)))))).------.....)))(((((((....))))))).. ( -22.10) >DroSec_CAF1 3808 103 - 1 GCAAAUUGAUUUGAAUUGCAAAACAAACACGAGAGCGUUGACGACAUCGGCCUAUAGAACUAUAUAUAUAUAUGUAUAUACACGUUGGACGGGAGUCCAGCUA ((...(((.((((.....)))).)))...(((...((....))...))))).........((((((((....))))))))...(((((((....))))))).. ( -24.20) >DroSim_CAF1 3856 102 - 1 GCAAAUUCAUUUGAAUUGCAAAACAAACACGAGAGCGUUGACGACAUCG-CCUAUAGAACUAUAUAUAUAUACAUAUAUACUCGUUGGACGGGAGUCCAGCUA ((((.(((....)))))))...........(((.(((.((....)).))-)...........(((((((....))))))))))(((((((....))))))).. ( -26.70) >DroEre_CAF1 3875 95 - 1 GCAAAUUCAUUUGAAUUGCAAAACAAACACGAGAGCGUCGACGACAUCAGCCUAUAGGACUAUAUA--------UAUAUACUCGUUGGACGGGAGUCCAGCUA ((((.(((....)))))))...........(((...(((...)))...((((....)).)).....--------......)))(((((((....))))))).. ( -23.60) >DroYak_CAF1 3926 99 - 1 GCAAAUUCAUUUGAAUUGCAAAACAAACACGAGAGACUUGACGACAUCAGCCUAUAGGACUAUAUACA----CAUAUAUACUCGUUGGACGGGAGUCCAGCUA ((((.(((....)))))))...........(((.................((....))..((((((..----..)))))))))(((((((....))))))).. ( -22.50) >consensus GCAAAUUCAUUUGAAUUGCAAAACAAACACGAGAGCGUUGACGACAUCGGCCUAUAGAACUAUAUAUAU_____UAUAUACUCGUUGGACGGGAGUCCAGCUA ((((.(((....)))))))...........(((((.(((((.....))))))).......((((((........)))))))))(((((((....))))))).. (-19.42 = -20.74 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:04 2006