Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 633,152 – 633,264 |
Length | 112 |
Max. P | 0.809695 |
Location | 633,152 – 633,264 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 85.59 |
Mean single sequence MFE | -34.83 |
Consensus MFE | -22.39 |
Energy contribution | -25.07 |
Covariance contribution | 2.67 |
Combinations/Pair | 1.09 |
Mean z-score | -2.89 |
Structure conservation index | 0.64 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 633152 112 + 27905053 GAAUGGAAAAUGGU----GGUGCACAAAGGGUAAUCACCUCCUCAGUCGACUACUUGUACACCAUAUCGAUGUAGACAUCCUUUUUAAACUUUCUGAUAGGUUCAAUCUGCUAGCA (((((((((...((----((((.(((...((((.((..((....))..)).))))))).))))))...((((....))))..........))))).....))))............ ( -19.60) >DroSec_CAF1 49011 115 + 1 GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGACAUCCUUUUUAAACUUUCUGAUACGUCCA-UUUGCCAAUA ...(((((((((((((....(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))))).)))-)))))))... ( -42.40) >DroSim_CAF1 50647 115 + 1 GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGAUAUUCUUUUUAAACUUUCUGAUACGUCCA-UUUGCCAAUA ...(((((((((((((....(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))))).)))-)))))))... ( -42.50) >consensus GAAUGGCAAAUGGUGUGUGGGUCAGAAAGGGUAUUGACUUCCGUAGUCGACUCCUUGUACACUAUAUCGGUGUAGACAUCCUUUUUAAACUUUCUGAUACGUCCA_UUUGCCAAUA ...((((((((((.......(((((((((((..((((((.....))))))..)).(.((((((.....)))))).).............)))))))))....))).)))))))... (-22.39 = -25.07 + 2.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:20 2006