Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,234,955 – 3,235,096 |
Length | 141 |
Max. P | 0.989077 |
Location | 3,234,955 – 3,235,071 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.62 |
Mean single sequence MFE | -49.15 |
Consensus MFE | -22.56 |
Energy contribution | -23.65 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.44 |
Mean z-score | -2.24 |
Structure conservation index | 0.46 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3234955 116 + 27905053 CUCGCAAGCAGAGGUGGACCUGGAGCACUUUGCCCCAGCUCUUUUUGCCUUGGCGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCUUUCUGCA----CUGGCUACCGG ...((.(((.((((((((.((((.((.....)).)))).)))....)))))...))).))..((((((((((((((..((..((((....))))..))...))))----)))))))))). ( -50.40) >DroPse_CAF1 2030 120 + 1 CUCCCAGGUGGAGGUGGAUCUGGAGCACUUUGCCCCGGCUCUCUUCGCCCUAGUGCUGGCCAUGAUAGCCAGUGCAUUGGUGUUUCUGCUGGAGCUGAUGUUCUCCAGGCUGGCUCCCUU .....(((.((((.(((.(((((((.((...((.(((((......((((...(..(((((.......)))))..)...)))).....))))).))....)).)))))))))).))))))) ( -52.30) >DroEre_CAF1 2324 116 + 1 CUCGCUGGCAGAGGUUGACCUGGAGCACUUUGCCCCGGCACUUUUUGCCCUGGUGCUCGCCAUGCUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCCUGCUGCA----CUGGCUACCGG ...((((((..(((....))).(((((((.......((((.....))))..))))))))))).))((((((((((((.((..((((....))))..)).)).)))----))))))).... ( -52.20) >DroMoj_CAF1 1595 112 + 1 CGCCCAGGUGGAGGUGGACCUCAAACACUUUGCGCCCGCGCUCUUCACCCUGCUCCUGGCCAUGCUGGUCAGCGCGUCGGUGUUUCUGCUGGAGCUGCUCUGCGG----CUACCUC---- .(((((((((((((....))))...)))...(((((((.((....((((.(((..((((((.....)))))).)))..)))).....))))).)).)).))).))----)......---- ( -41.60) >DroAna_CAF1 2178 116 + 1 CUCCCGAGCCGAGGUAGACCUAGAGCACUUUGCCCCUGCCCUUUUCACCCUGGCGCUUGCCAUGGUGGCCAGUGCUCUGGUCUUCUUGCUGGAGGUCUUCAUGCA----CUGGCUACCCG ....((((((.(((..((...((.(((.........))).))..))..))).).)))))....((((((((((((...(..((((.....))))..).....)))----))))))))).. ( -46.10) >DroPer_CAF1 2016 120 + 1 CUCCCAGGUGGAGGUGGAUCUGGAGCACUUUGCCCCGGCUCUCUUCGCCCUAGUGCUGGCCAUGAUAGCCAGUGCAUUGGUGUUUCUGCUGGAGCUGAUGUUCUCCAGGCUGGCUCCCUU .....(((.((((.(((.(((((((.((...((.(((((......((((...(..(((((.......)))))..)...)))).....))))).))....)).)))))))))).))))))) ( -52.30) >consensus CUCCCAGGCGGAGGUGGACCUGGAGCACUUUGCCCCGGCUCUCUUCGCCCUGGUGCUGGCCAUGAUGGCCAGUGCGCUGGUCUUUCUGCUGGAGCUCAUGUUCCA____CUGGCUACCGG ((((..((((((((((((.((((.((.....)).)))).....))))))(((((((..(((.....)))....)))))))....)))))))))).......................... (-22.56 = -23.65 + 1.09)
Location | 3,234,995 – 3,235,096 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -42.65 |
Consensus MFE | -36.71 |
Energy contribution | -36.72 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.19 |
Mean z-score | -3.01 |
Structure conservation index | 0.86 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3234995 101 + 27905053 CUUUUUGCCUUGGCGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCUUUCUGCACUGGCUACCGGACUUUCGAAGGAGGUUGGGUACCAU .....(((((((((....))))((((((((((((((..((..((((....))))..))...))))))))))))))((((((.....))))))))))).... ( -42.60) >DroSec_CAF1 2304 101 + 1 CUUUUUGCCCUGGCGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUAUUUUUGCACUGGCUACCGGACUUUCCAAGGAGGUUGGGUACCGU .....(((((((((....))))((((((((((((((..(((..(((.....)))..)))..))))))))))))))((((((.....))))))))))).... ( -44.30) >DroSim_CAF1 2305 101 + 1 CUUUUUGCCCUGGCGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCUUUUUGCACUGGCUACCGGACUUUCGAAGGAGGUUGGGUACCAU .....(((((((((....))))((((((((((((((..((..((((....))))..))...))))))))))))))((((((.....))))))))))).... ( -45.10) >DroEre_CAF1 2364 101 + 1 CUUUUUGCCCUGGUGCUCGCCAUGCUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCCUGCUGCACUGGCUACCGGACUUUCGAAGGAGGUUGGGAACCAU ......((..((((....)))).))((((((((((((.((..((((....))))..)).)).))))))))))((.((((((.....)))))).))...... ( -40.60) >DroYak_CAF1 2382 101 + 1 AUUUUUGCCCUGGUGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUUUGUUGGAACUCUUUCUGCACUGGCUAGCGGACUUUCGAAGGAGGUUGGGAACCAU ..........((((.((((((.((.(((((((((((..((..((((....))))..))...))))))))))).)).....((....)))).)))).)))). ( -34.70) >DroAna_CAF1 2218 101 + 1 CUUUUCACCCUGGCGCUUGCCAUGGUGGCCAGUGCUCUGGUCUUCUUGCUGGAGGUCUUCAUGCACUGGCUACCCGACUUUCGGGCCAGGCUGGGAGCCAU ........((..((.((.(((..((((((((((((...(..((((.....))))..).....))))))))))))((.....))))).))))..))...... ( -48.60) >consensus CUUUUUGCCCUGGCGCUCGCCAUGGUGGCCAGUGCGCUGGUCUUUCUGCUGGAACUCUUUCUGCACUGGCUACCGGACUUUCGAAGGAGGUUGGGAACCAU .......(((((((....)))).(((((((((((((..((..((((....))))..))...))))))))))))).((((((.....)))))))))...... (-36.71 = -36.72 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:03 2006