Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,231,051 – 3,231,249 |
Length | 198 |
Max. P | 0.999857 |
Location | 3,231,051 – 3,231,147 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 98.12 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -25.04 |
Energy contribution | -25.28 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.98 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964786 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3231051 96 + 27905053 UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGUACAAAAUGUUUUUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGGCA .((((((.((((((((((......(((((......))).))((...((.((((((....))))))))...)).))))))..))))...)))))).. ( -26.30) >DroSec_CAF1 55618 96 + 1 UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGCACAAAAUGUUUUUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGGCA .((((((.((((((((((......(((((......))).))((...((.((((((....))))))))...)).))))))..))))...)))))).. ( -26.30) >DroSim_CAF1 57057 96 + 1 UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGCACAAAAUGUUUUUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGGCA .((((((.((((((((((......(((((......))).))((...((.((((((....))))))))...)).))))))..))))...)))))).. ( -26.30) >DroEre_CAF1 50500 94 + 1 UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGCGCAAAAUGUU-UUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGG-A (((((((.((((((((((......(((((......))).))((...((.(((((.....-)))))))...)).))))))..))))...))))))-) ( -24.60) >DroYak_CAF1 41638 95 + 1 UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGCACAAAAUGUU-UUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGGCA .((((((.((((((((((......(((((......))).))((...((.(((((.....-)))))))...)).))))))..))))...)))))).. ( -24.60) >consensus UUCCUGCCGCUGUUUCAGUUUUCUGCUGCUCAUUUGCAUGUGGCCUUGCACAAAAUGUUUUUUGUCAUUACCGUUGAAAGUCAGCUAAGCAGGGCA .((((((.((((((((((......(((((......))).))((...((.((((((....))))))))...)).))))))..))))...)))))).. (-25.04 = -25.28 + 0.24)
Location | 3,231,051 – 3,231,147 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 98.12 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -26.26 |
Energy contribution | -26.46 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.91 |
Structure conservation index | 0.96 |
SVM decision value | 4.27 |
SVM RNA-class probability | 0.999857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3231051 96 - 27905053 UGCCCUGCUUAGCUGACUUUCAACGGUAAUGACAAAAAACAUUUUGUACAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA ...((((((..((((..(((((..(((..((((((((....)))))).))..)))...(((......))).........))))))))))))))).. ( -28.20) >DroSec_CAF1 55618 96 - 1 UGCCCUGCUUAGCUGACUUUCAACGGUAAUGACAAAAAACAUUUUGUGCAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA ...((((((..((((..(((((..(((..((((((((....)))))).))..)))...(((......))).........))))))))))))))).. ( -28.20) >DroSim_CAF1 57057 96 - 1 UGCCCUGCUUAGCUGACUUUCAACGGUAAUGACAAAAAACAUUUUGUGCAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA ...((((((..((((..(((((..(((..((((((((....)))))).))..)))...(((......))).........))))))))))))))).. ( -28.20) >DroEre_CAF1 50500 94 - 1 U-CCCUGCUUAGCUGACUUUCAACGGUAAUGACAAA-AACAUUUUGCGCAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA .-.((((((..((((..(((((..(((..((.((((-.....))))..))..)))...(((......))).........))))))))))))))).. ( -24.90) >DroYak_CAF1 41638 95 - 1 UGCCCUGCUUAGCUGACUUUCAACGGUAAUGACAAA-AACAUUUUGUGCAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA ...((((((..((((..(((((..(((..(((((((-.....))))).))..)))...(((......))).........))))))))))))))).. ( -27.30) >consensus UGCCCUGCUUAGCUGACUUUCAACGGUAAUGACAAAAAACAUUUUGUGCAAGGCCACAUGCAAAUGAGCAGCAGAAAACUGAAACAGCGGCAGGAA ...((((((..((((..(((((..(((..(((((((......))))).))..)))...(((......))).........))))))))))))))).. (-26.26 = -26.46 + 0.20)
Location | 3,231,147 – 3,231,249 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.52 |
Mean single sequence MFE | -32.23 |
Consensus MFE | -24.20 |
Energy contribution | -24.33 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.75 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.819223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3231147 102 + 27905053 GCACAAAAGGAUGCCAAAGACAAAAGGGGAAGCUGAACUCGCAUCCGUAUCCGC-AUCCGCAACCGGGGAUGCAUCC----------GGGAGCAUCCGCAAAAAUGUCAACAA ........(((((((...((.......(((.((.......)).)))......((-((((.(....).)))))).)).----------..).))))))................ ( -28.00) >DroSim_CAF1 57153 102 + 1 GCACAAAAGGAUGCCAAAGACAAAGGGGGAAGCUGCACUCGCAUCCGUAUCCGC-AUCCGCACCCGGGGAUGCAUCC----------GCGAGCAUCCGCAAAAAUGUCAACAA (((........)))....((((..((((((.(((((....)))...)).)))((-....)).)))(.((((((....----------....)))))).).....))))..... ( -30.20) >DroEre_CAF1 50594 113 + 1 GCACAAAAGGAUGCCAAAGACAAAAGGGGAAGCUGCACUCGCAUCCGUAUCCGCGAGUCGCAUUCGGGGAUGCAUCCGCGAGCAUCCGCGAGCAUCCGCAAAAAUGUCAACAA (((........)))....((((...(.(((.(((((((((((..........)))))).))).(((.((((((........)))))).))))).))).).....))))..... ( -38.60) >DroYak_CAF1 41733 106 + 1 GCACAAAAGGAUGCCAAAGACAAAAGGGGAAGCUGCACUCGCAUCCGUAUCCG-------CACCCGGGGAUGCAUCCGCAAGCAUCCGCGAGCAUCCGCAAAAAUGUCAACAA ........((((((...........(.(((.(((((....)))...)).))).-------)...((.((((((........)))))).)).))))))................ ( -32.10) >consensus GCACAAAAGGAUGCCAAAGACAAAAGGGGAAGCUGCACUCGCAUCCGUAUCCGC_AUCCGCACCCGGGGAUGCAUCC__________GCGAGCAUCCGCAAAAAUGUCAACAA (.(((...((((((......(....).(((.((.......)).))))))))).............(.((((((.((((........)).)))))))).).....))))..... (-24.20 = -24.33 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:58 2006