Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,229,650 – 3,229,747 |
Length | 97 |
Max. P | 0.582444 |
Location | 3,229,650 – 3,229,747 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.87 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -15.40 |
Energy contribution | -17.20 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.74 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582444 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3229650 97 + 27905053 GCUGUUGGCAAAUAAAACUGUUGGCGCUAACAUUAAACGGCUAUGAAGUGUGGAAACUAACAAUGGA-GGAAAUUCGUAGUCGGAAAAAAGUAAGCAA---- ...((..(((........)))..))(((.((......((((((((((.((((....)..))).....-.....)))))))))).......)).)))..---- ( -24.32) >DroSec_CAF1 54223 102 + 1 GCUGUUGGCAAAUAAAACCGUUGGCGCUAACAUUAAAAGGCUAUGAAGUGUGGAAACUAACAAUGGAAGGAAAUUCGUAGUCGGAAAAAAGUAAGCGAAAAA (((((((((.(((......)))...)))))).......(((((((((.((((....)..)))...........)))))))))...........)))...... ( -20.60) >DroSim_CAF1 55643 102 + 1 GCUGUUGGCAAAUAAAACCGUUGGCGCUAACAUUAAACGGCUAUGAAGUGUGGAAACUAACAAUGGAAGGAAAUUCGUAGUCGGAAAAAAGUAAGAAAAAAA (((((((((.(((......)))...))))))......((((((((((.((((....)..)))...........))))))))))......))).......... ( -20.50) >DroEre_CAF1 48624 100 + 1 GCUGUUGGCAAAUAAAACCGUUGGCGCUAACAUUAAACGGCUAUGA-GUGUGGAAACUAACAAUGGA-UGAAACUCUCAUUCGGGAAAAAAUAUGCGAAAAA ....((.(((.......(((((((((((..(((.........))))-))))(....)...)))))).-......((((....)))).......))).))... ( -18.50) >DroYak_CAF1 40092 100 + 1 GCUGUUGGCAAAUAAAACCGUUGGCGCUAACAUUAAACGGCUAUGAAGUGUGGAAACUAACAAUGGA-UGCAAGUCUCAGUCGA-AAAAAGUGAGCAAAAAC (((((((((.(((......)))...))))))......(((((..((..((((....(((....))).-))))..))..))))).-........)))...... ( -19.60) >consensus GCUGUUGGCAAAUAAAACCGUUGGCGCUAACAUUAAACGGCUAUGAAGUGUGGAAACUAACAAUGGA_GGAAAUUCGUAGUCGGAAAAAAGUAAGCAAAAAA (((((((((.(((......)))...))))))).....((((((((((.((((....)..)))...........))))))))))...........))...... (-15.40 = -17.20 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:56 2006