Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,869,220 – 27,869,329 |
Length | 109 |
Max. P | 0.911104 |
Location | 27,869,220 – 27,869,329 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.11 |
Mean single sequence MFE | -24.61 |
Consensus MFE | -17.06 |
Energy contribution | -18.03 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.26 |
Mean z-score | -1.94 |
Structure conservation index | 0.69 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.911104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27869220 109 + 27905053 CACGGAGUGGUGGUCAAUUUGAACUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAAGAAAAAGGCCACCAAGAAGACCUAAGAAAAUGAACAAG ...((..((((((((....((.(((..((((((......))))))..))).))(((.....(....)....)))...))))))))......))................ ( -27.20) >DroSec_CAF1 179200 108 + 1 -ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAGGCCACCAAGAAGACCUAAGGAAAUGAACAAA -..((..((((((((....((..((..((((((......))))))..))..))((((....(....)...))))...))))))))......))................ ( -29.70) >DroSim_CAF1 181434 108 + 1 -ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAAGCCACCAAGAAGACCUAAGGAAAUGAACAAA -..((..(((((((.....((..((..((((((......))))))..))..))((((....(....)...))))....)))))))......))................ ( -26.20) >DroEre_CAF1 210294 106 + 1 CAAGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGCCCAUUCAAUCACGCAAGCACUGAAAAAAGCCAACAAAAAGACUUAAGGAAAAGA---GA ((..(..(((((((.....((.(((..((((((......))))))..))).))....))))).))..)..))................................---.. ( -21.10) >DroYak_CAF1 182665 108 + 1 CACGGAGUGGUGGUCAAUUUGAGCUCGUAGUGUUGUACUACACUGAAAGCCCAUUCAAUCACGCAAGGACUGAAAAACGCCACCAA-AAGUUCUAAGGAAGAGAACAGA .......(((((((.....((.(((..((((((......))))))..))).))((((.((.(....))).))))....))))))).-..(((((.......)))))... ( -32.80) >DroAna_CAF1 204675 97 + 1 -ACGGUACGUUGAUCAUCGCCAUACCGGAAUGUUGUACUACACUCAAAAUCCGUUCAACCACUCAAUCAAUGCAGAACAAAUACAAAAAUA-----G------AAAAUA -.(((((.(.((.....)).).)))))((.(((......))).)).......((((..................)))).............-----.------...... ( -10.67) >consensus _ACGGAGUGGUGGUCAAUUUGAGCUCGGAGUGUUGUACUACACUCAAAGUCCAUUCAAUCACGAAAGCAAUGAAAAAAGCCACCAAGAAGACCUAAGGAAAUGAACAAA .......(((((((.....((.(((..((((((......))))))..))).))((((....(....)...))))....)))))))........................ (-17.06 = -18.03 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:41 2006