Locus 10349

Sequence ID 3R_DroMel_CAF1
Location 27,867,180 – 27,867,273
Length 93
Max. P 0.500000
window16473

overview

Window 3

Location 27,867,180 – 27,867,273
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 78.79
Mean single sequence MFE -27.35
Consensus MFE -14.59
Energy contribution -14.70
Covariance contribution 0.11
Combinations/Pair 1.17
Mean z-score -1.77
Structure conservation index 0.53
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27867180 93 + 27905053
ACACAAAAG--AACCUGAGAAGCUCGAGUUGCCGGUGUCAUUUGGAUUGAUUUAAUUGAAGCCGAUUACCCAGCUGGAUUCUGCAGCCCAGGCCA----
.........--..((((.(..((((.(((((.((((.(((.(((((....))))).))).))))......))))).))....))..).))))...---- ( -21.20)
>DroVir_CAF1 232738 85 + 1
GCACAAAGGC-AAC-------G-UGCAAUUGUCGGUGUCGU-UGGCUUUAUUUAAUUGAAGUCAAUUACACAGCUGGAUAUGCCAGGCCAGACAA----
((((...(..-..)-------)-)))..(((((.((((.((-((((((((......)))))))))).))))..((((.....))))....)))))---- ( -30.80)
>DroPse_CAF1 264885 92 + 1
GCACAAAAGCGAAC-------GUUCAAAUUGCCGGUGUCGUUUGGCUUGAUUUAAUUGAAGCCGAUUACACAGCUGGAUAUGGCAGACCCGGCCAAUCC
((......))....-------.........(((((.((((((((((((.(......).)))))))..))...(((......))).))))))))...... ( -27.40)
>DroEre_CAF1 208190 93 + 1
ACACAAAAG--AACCUGAGGAGCUCGAAUUGCCGGUGUCGUUUGGCUUGAUUUAAUUGAAGCCGAUUUCCCAGCUGGAUCCUGCAGCACAGGCCA----
.........--..((((.(..((..((....(((((.....(((((((.(......).))))))).......))))).))..))..).))))...---- ( -23.80)
>DroMoj_CAF1 261123 85 + 1
GCACAAAGGC-AAC-------G-UGCAAUUGUCGGUGUCGU-UGGCUUUAUUUAAUUGAAGUCAAUUACACAGCUGGAUAUGCCAGCCCAGACAG----
((((...(..-..)-------)-)))...((((.((((.((-((((((((......)))))))))).)))).(((((.....)))))...)))).---- ( -33.50)
>DroPer_CAF1 252292 92 + 1
GCACAAAAGCGAAC-------GUUCAAAUUGCCGGUGUCGUUUGGCUUGAUUUAAUUGAAGCCGAUUACACAGCUGGAUAUGGCAGACCCGGCCAAUCC
((......))....-------.........(((((.((((((((((((.(......).)))))))..))...(((......))).))))))))...... ( -27.40)
>consensus
GCACAAAAGC_AAC_______G_UCAAAUUGCCGGUGUCGUUUGGCUUGAUUUAAUUGAAGCCGAUUACACAGCUGGAUAUGGCAGCCCAGGCCA____
..............................(((.((((...(((((((.(......).)))))))..))))..(((.......)))....)))...... (-14.59 = -14.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:39 2006