Locus 10347

Sequence ID 3R_DroMel_CAF1
Location 27,861,710 – 27,861,830
Length 120
Max. P 0.790833
window16468

overview

Window 8

Location 27,861,710 – 27,861,830
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.67
Mean single sequence MFE -24.64
Consensus MFE -22.80
Energy contribution -22.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.93
SVM decision value 0.59
SVM RNA-class probability 0.790833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27861710 120 + 27905053
AAGCGGAAGGGAUACCGCUCAUGACUUGGAAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUAUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAAAUUCAACAAACCA
.(((((........))))).......(((.((((....)))).((((.((((..(((........)))..)))))((((((....))))))...........)))............))) ( -22.60)
>DroSec_CAF1 170936 120 + 1
AAGCGGAAGGGAUACCGCUCAUGACUUGGGAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUGUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAAAUUCAACAAACCA
.(((((........)))))..(((.(((((((((....))))...(((((((..(((........)))..)))).((((((....))))))..)))......)))))..)))........ ( -25.20)
>DroSim_CAF1 173154 120 + 1
AAGCGGAAGGGAUACCGCUCAUGACUUGGGAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUGUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAAAUUCAACAAACCA
.(((((........)))))..(((.(((((((((....))))...(((((((..(((........)))..)))).((((((....))))))..)))......)))))..)))........ ( -25.20)
>DroEre_CAF1 201014 120 + 1
AAGCGGAAGGGAUACCGCUCAUGACUUGGAAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUAUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAGAUUCAACAAACCA
.(((((........))))).......(((.((((....)))).((((.((((..(((........)))..)))))((((((....))))))...........)))............))) ( -22.60)
>DroYak_CAF1 174765 120 + 1
AAGCGGAAGGAAUCCCGCUCAUGACGUGGAAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUAUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAAAUUCAACAAACCA
.(((((........))))).((((((((..((((....))))...(((......(((........)))....)))((....)).......))))))))...................... ( -27.60)
>consensus
AAGCGGAAGGGAUACCGCUCAUGACUUGGAAAGGGAAACUUUAGAGGCGCUUAAGGUAAAAUAUAAUCAAAAGCCGUGAAAACAUUUUUACACGUCAUUAAACUCAAAUUCAACAAACCA
.(((((........))))).......(((.((((....)))).((((.((((..(((........)))..)))))((((((....))))))...........)))............))) (-22.80 = -22.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:35 2006