Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,851,128 – 27,851,225 |
Length | 97 |
Max. P | 0.731715 |
Location | 27,851,128 – 27,851,225 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.92 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -12.48 |
Energy contribution | -13.01 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -2.65 |
Structure conservation index | 0.63 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27851128 97 - 27905053 UUUGCGAGUAUUUUCUUUUAAUUUUUUC-----UCCCCUCAACUUUGCUGAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUG-CUUGCUUGG ...(((((((.((((((((((((((..(-----.............)..)))))))))..)))))........(((((.....)))))...))-))))).... ( -21.82) >DroPse_CAF1 224183 100 - 1 GUUCUGAGUAUUUUCUUUUAAUUUUUUGUAUUUCCCCCUCAACUUU---GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUUCUUUGCUUUU ......((((.((((((((((((((..((............))...---)))))))))..)))))...)))).(((((.....)))))............... ( -16.70) >DroWil_CAF1 210900 96 - 1 UCUUUCAGUAUUUUCUUUUAAUUUUUUU--UCCCCCCCUCAAGUUUG--GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGUGUGCUUC---UUACCUUA .....(((((((((....((((((..((--(((.............)--))))..))))))))))))))).....(((((.....)))))..---........ ( -15.52) >DroYak_CAF1 163109 98 - 1 UUUGUGAGUAUUUUCUUUUAAUUUUUUC-----UCCCCUCUACUUUGCUGAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUGGUUUGGUUUG ......((((.((((((((((((((..(-----.............)..)))))))))..)))))...)))).(((((.....)))))............... ( -16.42) >DroAna_CAF1 165341 97 - 1 UUUGCGAGUAUUUUCUUUUAAUUUUCCC------GCCCCCAACUUUGGGGAAAUUAGAUUAGAAAUAUAGCUAGCAGCAUUCUGCUGGCUUUGGUUUGCUUUU ...(((((((((((..((((((((((((------(..........)))))))))))))...)))))))(((((((((....))))))))).....)))).... ( -32.10) >DroPer_CAF1 228765 100 - 1 GUUCUGAGUAUUUUCUUUUAAUUUUUUGUAUUUCCCCCUCAACUUU---GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUUCUUUGCUUUU ......((((.((((((((((((((..((............))...---)))))))))..)))))...)))).(((((.....)))))............... ( -16.70) >consensus UUUGUGAGUAUUUUCUUUUAAUUUUUUC_____CCCCCUCAACUUUG__GAAAUUAGAUUAGAAAUAUUGCUACCAGCAUUCUGCUGGCUUUG_UUUGCUUUU ......((((.((((((((((((((........................)))))))))..)))))...)))).(((((.....)))))............... (-12.48 = -13.01 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:29 2006