| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,836,834 – 27,836,930 |
| Length | 96 |
| Max. P | 0.518758 |
| Location | 27,836,834 – 27,836,930 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Mean single sequence MFE | -21.88 |
| Consensus MFE | -12.73 |
| Energy contribution | -12.93 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.58 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518758 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27836834 96 + 27905053 AAG-----GGAAAGGCGUUUAAAAAGUUAAUAAUGGUAGUAAGUUAACCGAAUUUGUUGCAUACUUUGCAGCUAUGGUUCACAAAACGUACUGAGAUGG-GA------- ...-----......((((((.....((((((...........)))))).(((((.((((((.....))))))...)))))...))))))..........-..------- ( -18.40) >DroPse_CAF1 197794 99 + 1 AAGCCCU--CGGAAGCGUUUAAAAAGUUAACACUAGCAAAAAGUUAACCAAAUUUGUUGCAUACUUUGCAGCAUCGGUUCACAAAACACACUGAGCCGG-GA------- .....((--(((.((.((.......((((....)))).....((.((((.....(((((((.....)))))))..)))).)).....)).))...))))-).------- ( -24.10) >DroGri_CAF1 191992 100 + 1 AG-GCUCG------GCGUUUAAAAAGUUAACACUAGUC-AAAGUUAACCAAAUUUGUUGCAUACUUUGCUGCGUCGCUUCACAAAACACACUGAGCUGA-GCUAAGCAA .(-(((((------((.........((((((.......-...)))))).......((.(((.....))).))......................)))))-)))...... ( -22.30) >DroEre_CAF1 175816 100 + 1 AA-GCGUGGCAAAGGCGUUUAAAAAGUUAAUAAUGGUAAAAAGUUAACCGAAUUUGCUGCAUACUUUGCAGCUACGGUUCACAAAGCGUACUGAGCUGG-GA------- ..-.(.((((..((((((((.....((((((...........)))))).(((((.((((((.....))))))...)))))...)))))).))..)))).-).------- ( -25.80) >DroWil_CAF1 190515 95 + 1 AAGA------CUAGGCGUUUAAAAAGUUUGCACUAGUA-AAAGUUAACCAAAUUUGUUGCAUACUUUCCAGAGCCGGUUCACAAAACACACUGAACUAAGGA------- ....------...(((.(((..(((((.((((.(((..-..............))).)))).)))))..))))))((((((..........)))))).....------- ( -16.59) >DroPer_CAF1 202825 99 + 1 AAGCCCU--CGGAAGCGUUUAAAAAGUUAACACUAGCAAAAAGUUAACCAAAUUUGUUGCAUACUUUGCAGCAUCGGUUCACAAAACACACUGAGCCGG-GA------- .....((--(((.((.((.......((((....)))).....((.((((.....(((((((.....)))))))..)))).)).....)).))...))))-).------- ( -24.10) >consensus AAGCC_U__CAAAGGCGUUUAAAAAGUUAACACUAGUAAAAAGUUAACCAAAUUUGUUGCAUACUUUGCAGCAUCGGUUCACAAAACACACUGAGCUGG_GA_______ .........................((((((...........)))))).......((((((.....))))))..(((((((..........)))))))........... (-12.73 = -12.93 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:27 2006