Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,228,746 – 3,228,860 |
Length | 114 |
Max. P | 0.705092 |
Location | 3,228,746 – 3,228,860 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.00 |
Mean single sequence MFE | -41.90 |
Consensus MFE | -21.33 |
Energy contribution | -22.72 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.15 |
Mean z-score | -1.92 |
Structure conservation index | 0.51 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3228746 114 + 27905053 GCC-GAUUUUAAUGCAGCCCAC-----UGGCGGGCAAGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCCAAAGGCCGCAGGAGUGGUCGUAAUGAGAGCUGGCACAUCGA (((-(.(((((.(((.......-----((((((((..((.((.((((((........)).)))).)).))..))))))))..((((((....))))))))).)))))..))))....... ( -47.40) >DroSec_CAF1 53340 108 + 1 GCC-GAUUUU-----------UUGGCGUGGCGGGCGUGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCCAAAGGCCGCAGGAGUGGUCGUAAUGAGAGCUGGCACAUCGA (((-(.((((-----------(..((.((((((((.(((.((.((((((........)).)))).)).))).))))))))..((((((....))))))))...))))).))))....... ( -48.20) >DroSim_CAF1 54726 119 + 1 GCC-GAUUUUAAUGCAGCCCACUGGCGUGGCGGCCGAGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCCAAAGGCCGCAGGAGUGGUCGUAAUGAGAGCUGGCACAUCGA (((-(.(((((.(((.......(((((.((((((((....((((..((((.....)))).)))).)))))..))))))))..((((((....))))))))).)))))..))))....... ( -50.80) >DroEre_CAF1 47732 110 + 1 GCC-GAUUUUAAUGCAGCCCA---------CGGACGAGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCUAAAGGCCGCAGGAGUGGCCGUAAUGAGAGCUGGCACAACGA (((-(.(((((.(((..((((---------....((.((.(....))))).....))))..(((((((......))))))).((((((....))))))))).)))))..))))....... ( -40.20) >DroYak_CAF1 39197 110 + 1 GCC-GAUUUUAAUGCUGCCCA---------CGGACGAGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCCAAAGGACGCAGGAGUGGCCGUAAUGAGAGCUGGCACAUCGA (((-(.(((((.(((.(((.(---------(...(..(..(.....((((.....))))..(((((((......))))))).)..)...)..))))).))).)))))..))))....... ( -36.00) >DroMoj_CAF1 67415 88 + 1 GCCAGAUUUUAAUGCUGGCUG---------C-----UGAAGGACAGCCGGCAAAAUGGAGAUUGGCGAGCA---------------CCAACAAUGUUCAUAAUGAGAGC---AACAUCAA (((((.(((((.(((((((((---------(-----.....).)))))))))...))))).)))))(((((---------------.......)))))....(((....---....))). ( -28.80) >consensus GCC_GAUUUUAAUGCAGCCCA_________CGGACGAGGACGACAGCCCGGAAAAUGGGAGUUGGCGGCUAAGCCCGCCAAAGGCCGCAGGAGUGGUCGUAAUGAGAGCUGGCACAUCGA (((...(((((.............................((((..((((.....)))).))))(((((((..((.((........)).))..)))))))..)))))...)))....... (-21.33 = -22.72 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:52 2006