Locus 10338

Sequence ID 3R_DroMel_CAF1
Location 27,807,865 – 27,807,979
Length 114
Max. P 0.562211
window16453

overview

Window 3

Location 27,807,865 – 27,807,979
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 82.04
Mean single sequence MFE -22.47
Consensus MFE -19.65
Energy contribution -20.10
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.01
Structure conservation index 0.87
SVM decision value 0.06
SVM RNA-class probability 0.562211
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27807865 114 + 27905053
CCUACCUUAUCGCCUUUGCUUCGCAAACCAGGUGAUCGCACCACCUAAGGAAGUUGCACGCUGCACUGUCGCGACGCACGGAACAAAACCACGAAGGAUAUAUGCUCACGUUGA
....(((..(((....(((.((((.....(((((.......)))))..(..(((.((.....)))))..))))).))).((.......)).))))))................. ( -24.80)
>DroSec_CAF1 125201 95 + 1
CCUACCUUAACGCCUUUUCUUCGCCAACCAGGUGAUCGCACCACCAAAGGUAGUUGCAAGCUGCACUAUCGCGACGCAAAGAACAAAAACACGAA-------------------
.............((((.(.((((......((((....))))......((((((.((.....)))))))))))).).))))..............------------------- ( -21.30)
>DroSim_CAF1 126586 95 + 1
CCUACCUUAACGCCUUUUCUUCGCCAACCAGGUGAUCGCACCACCAAAGGUAGUUGCAAGCUGCACUAUCGCGACGCAAAGAACAAAAACACGAA-------------------
.............((((.(.((((......((((....))))......((((((.((.....)))))))))))).).))))..............------------------- ( -21.30)
>consensus
CCUACCUUAACGCCUUUUCUUCGCCAACCAGGUGAUCGCACCACCAAAGGUAGUUGCAAGCUGCACUAUCGCGACGCAAAGAACAAAAACACGAA___________________
.............((((.(.((((......((((....))))......((((((.((.....)))))))))))).).))))................................. (-19.65 = -20.10 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:22 2006