Locus 10337

Sequence ID 3R_DroMel_CAF1
Location 27,805,850 – 27,805,970
Length 120
Max. P 0.550495
window16452

overview

Window 2

Location 27,805,850 – 27,805,970
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -36.30
Consensus MFE -30.50
Energy contribution -31.17
Covariance contribution 0.67
Combinations/Pair 1.07
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.550495
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27805850 120 + 27905053
GCAAGAUCCUAUUAUUUUGCUGGACCCAGCGGUGGAACCUACCUUAUCGCCGUUGCUUCGCGAACCAGGUGAUCGCACCACCAAAGAAAGUUGCACGCUGCACUGUCGCGACGCACGGAA
....(((...........((((....))))(((((...)))))..))).((((.((.((((((....((((....)))).........(((.((.....))))).)))))).)))))).. ( -38.20)
>DroSec_CAF1 124829 104 + 1
----------------UUGCUGGACCCAGCGGUGGAACCUACCUAAUCGCCGUUUCUUCGCACACCAGGUGAUCGUAUCACCAAAGCAAGUUGCAAGCUGCACUGUCGCGACGCGGAGAA
----------------..((((....))))(((((...)))))..........((((((((......((((((...)))))).......(((((..((......)).))))))))))))) ( -35.10)
>DroSim_CAF1 126221 104 + 1
----------------UUGCUGGACCCAGCGGUGGAACCUACCUAAUCGCCGUUUCUUCGCACACCAGGUGAUCGUAUCACCAAAGCAAGUUGCAAGCUGCACUGUCGCGACGCGAAGAA
----------------..((((....))))(((((...)))))..........((((((((......((((((...)))))).......(((((..((......)).))))))))))))) ( -35.60)
>consensus
________________UUGCUGGACCCAGCGGUGGAACCUACCUAAUCGCCGUUUCUUCGCACACCAGGUGAUCGUAUCACCAAAGCAAGUUGCAAGCUGCACUGUCGCGACGCGAAGAA
..................((((....))))(((((...)))))..........((((((((......((((.......)))).......(((((..((......)).))))))))))))) (-30.50 = -31.17 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:21 2006