| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,784,765 – 27,784,863 |
| Length | 98 |
| Max. P | 0.865473 |
| Location | 27,784,765 – 27,784,863 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.26 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.54 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27784765 98 + 27905053 AAUAUUAACCGGUUCAAAUUCUGAUUUGUGUAAUGAAGAAAUUGGCAUUG------GCAUGGGAAUGGGGCAGGACAUCAUGGUCGCUACCUGUGAAUGUAAAU------ .(((((..(((((((((.((((.(((.....)))..)))).)))).))))------)((((((...(.(((..(....)...))).)..)))))))))))....------ ( -19.40) >DroVir_CAF1 124546 108 + 1 AAUGUGAACCGGUGUGAAUUCAGUUUUAUGUAUUGAAGGUAUCGGUAUCGGUAAUGGCAUAGGUAGGGCGCAGGACAUCAUGGUCGCUACCUGUGAAUAGAAAUGAUA-- .......(((((((....((((((.......))))))..)))))))((((.......((((((((((((.((........))))).)))))))))........)))).-- ( -30.76) >DroGri_CAF1 125835 108 + 1 AAUGUGAACCGGUGAGAAUUCAGUUUUUAUUAUUGAAUUUAUUGGUAUUGGUAAUGGCAUAGGUAGGGGGCAGGACAUCAUGGUCGCUACCUGUGAAUAGAAAUGAUA-- .......(((((((.(((((((((.......))))))))).....))))))).....(((((((((.((.((........)).)).))))))))).............-- ( -30.20) >DroWil_CAF1 125246 110 + 1 AAUGUGAACCGGUGUGAAUUCUGAUUUAUGUAUUGAAGAUAUCGGUAACGGUAAUGACAUAGGAAGAGGGCAGGACAUCAUGGUCGCUACCUGUGAAUGCAAAUCAAACA .....................(((((..((((((.....(((((....)))))....((((((.((.((.((........)).)).)).))))))))))))))))).... ( -23.40) >DroAna_CAF1 114346 104 + 1 AAUGUGAACCGAUGCGAAUUCUGGUUUGUGUAUUGACGGAAUCGGUAUUGGUAAUUGCAUGGGUAGGGGGCAGGACAUCAUGGUCGCUACCUGUGGGGGAGAAG------ .......((((((((..((((((.............))))))..))))))))..((.(((((((((.((.((........)).)).))))))))).))......------ ( -33.62) >DroPer_CAF1 127568 105 + 1 AAUAUGAACCGAUGCAAAUUCUGUUUUGUGUAGUGAAGGAAUCGGUAUCGGUAAUUGCAUAGGAAGGGGGCAGGACAUCAUGGUCGCUACCUGUGUAAAUAGAUA----- .......((((((((..(((((.(((........))))))))..))))))))..(((((((((.((.((.((........)).)).)).))))))))).......----- ( -33.20) >consensus AAUGUGAACCGGUGCGAAUUCUGUUUUGUGUAUUGAAGGAAUCGGUAUCGGUAAUGGCAUAGGAAGGGGGCAGGACAUCAUGGUCGCUACCUGUGAAUAGAAAU______ .......((((((((...(((.............))).))))))))...........((((((.((.((.((........)).)).)).))))))............... (-18.62 = -18.54 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:18 2006