Locus 10334

Sequence ID	3R_DroMel_CAF1
Location	27,777,482 – 27,777,574
Length	92
Max. P	0.816222

overview

Window 8

Location	27,777,482 – 27,777,574
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	92.83
Mean single sequence MFE	-32.34
Consensus MFE	-26.54
Energy contribution	-27.66
Covariance contribution	1.12
Combinations/Pair	1.08
Mean z-score	-1.60
Structure conservation index	0.82
SVM decision value	0.66
SVM RNA-class probability	0.816222
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27777482 92 - 27905053
AGCCGACGAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCAAGCGUUUGGUCGGGUGGUAGCAGGAGCUGCAUCCCAGGCAGA
.((((((.(((((.....((.......)).....(((((.....)))))..)).))).)))(((..(((((....)))))..))).)))... ( -33.10)
>DroSec_CAF1 93494 92 - 1
AGCCGUCGAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCCGGCGGUUGGUCGGGUGGUAGCAGGAGCUGCAUCCCAGGCAGA
(((((((((((((...((((..((......))..)))).))))).....)))))))).((((((..(((((....)))))..))).)))... ( -33.50)
>DroSim_CAF1 94279 92 - 1
AGCCGUCGAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCCGGCGGUUGGUCGGGUGGUAGCAGGAGCUGCAUCCCAGGCAGA
(((((((((((((...((((..((......))..)))).))))).....)))))))).((((((..(((((....)))))..))).)))... ( -33.50)
>DroEre_CAF1 100061 92 - 1
AGCCGCCGAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCCGACGUUUGGUCGGGUGGUAGCAGGAGCCGCUCCCCAUGAAGA
.(((.(((...((.....))...)))))).......((((((..(((.(((((.....))))).))).))).((((...)))))))...... ( -30.50)
>DroYak_CAF1 96638 91 - 1
AGCCGCCAAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCCGACGUUUGGUCGGGUGGUAGCAGGAGCCGCUCG-CAGGCAGA
.((((((....((.....))......))).....((.((((((((((.(((((.....))))).))).....)))))).)..)-).)))... ( -31.10)
>consensus
AGCCGCCGAAAGCAAAUAGCAAAUGGGGCAAUAAGCUGGGCUUUUCAGCCGGCGUUUGGUCGGGUGGUAGCAGGAGCUGCAUCCCAGGCAGA
.(((.......((.....))...(((((.....((((..(((..(((.(((((.....))))).))).)))...))))...))))))))... (-26.54 = -27.66 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:17 2006