Locus 10333

Sequence ID 3R_DroMel_CAF1
Location 27,773,650 – 27,773,752
Length 102
Max. P 0.500000
window16447

overview

Window 7

Location 27,773,650 – 27,773,752
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 95.29
Mean single sequence MFE -20.63
Consensus MFE -17.92
Energy contribution -18.20
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -1.21
Structure conservation index 0.87
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27773650 102 - 27905053
CCCAAGAUAUACGGGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCACCAACAGAAGGAGCUGAAGGAUCAGCGGCGACUAA
..(((..(((((...)))))..)))......(((.((.......((((((........))))))...((.......)).(((((....))))).)).))).. ( -21.70)
>DroSec_CAF1 89579 102 - 1
CCCAAGAUAUACGGGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCACCAACAGAAGGAGCUGAAGGAUCAGCGGUGACUGA
(((.........)))((((((.(((.......(..(((......)))..)))).))))))..(((((((..(....)..(((((....))))))))).))). ( -22.31)
>DroSim_CAF1 90348 102 - 1
CCCAAGAUAUACGGGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCACCAACAGAAGGAGCUGAAGGAUCAGCGGUGACUGA
(((.........)))((((((.(((.......(..(((......)))..)))).))))))..(((((((..(....)..(((((....))))))))).))). ( -22.31)
>DroEre_CAF1 96046 102 - 1
CCGAGGAUAUAAGGGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCAGCAACAGAAGGAGCUGAAGGAUCAGCGGUGACUGA
.(((..((((.....))))...)))......(((.((.......((((((.......(((....)))))))))......(((((....))))).)).))).. ( -19.01)
>DroYak_CAF1 92628 102 - 1
CUGAAGAUAUACGUGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCAGAAACAGAAGGAGCUGAAGAUUCAGCGGUGACUGA
.......(((((...)))))...........(((.((.......((((((........))))))...............(((((....))))).)).))).. ( -17.80)
>consensus
CCCAAGAUAUACGGGGUGUAAAUUGAAUAAAAGUGGCAGAAAAAUGUUGUUAAAUUAUGCAGCAGCACCAACAGAAGGAGCUGAAGGAUCAGCGGUGACUGA
..(((..(((((...)))))..)))......(((.((.......((((((........))))))...............(((((....))))).)).))).. (-17.92 = -18.20 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:16 2006