Locus 10331

Sequence ID 3R_DroMel_CAF1
Location 27,764,821 – 27,764,915
Length 94
Max. P 0.983109
window16444

overview

Window 4

Location 27,764,821 – 27,764,915
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -29.92
Consensus MFE -26.54
Energy contribution -27.22
Covariance contribution 0.68
Combinations/Pair 1.03
Mean z-score -1.81
Structure conservation index 0.89
SVM decision value 1.93
SVM RNA-class probability 0.983109
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27764821 94 + 27905053
ACGGAGCAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAGGCGGCAGUUGCGGCUAUAGCAAUGACAGGGGUCACAGCAACAGCGUU
.....(((((.(((((.(((((((.((((....)))).))).)))).))))).))))).(((...((..((((....))))..))...)))... ( -31.70)
>DroSec_CAF1 79289 94 + 1
ACGGGGCAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAAGCGGCAGUUGCGGCUAUAGCAAUGACAGGGGUCAGAGCAACAGCGUU
.....(((((.(((((.(((((((.((((....)))).))).)))).))))).))))).(((...((..((((....))))..))...)))... ( -30.40)
>DroSim_CAF1 79577 94 + 1
ACGGAGCAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAGGCGGCAGUUGCGGCUAUAGCAAUGACAGGGGUCAGAGCAACAGCGUU
.....(((((.(((((.(((((((.((((....)))).))).)))).))))).))))).(((...((..((((....))))..))...)))... ( -32.70)
>DroEre_CAF1 84960 94 + 1
ACGGAACAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAGGCGGCAGUUGUGGCUAUAUCAACGACAGGGCUCACAGCAACAGCAUU
.......(((((((((.(((((((.((((....)))).))).)))).))))).(((((((((...((...))...))).)))))).....)))) ( -27.80)
>DroYak_CAF1 81577 94 + 1
ACGGAGCAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAGGCGGCAGUUGCGGCUAUAUCAACGACAGGGGUCACAGCAACAGCAUU
..((.(((((.(((((.(((((((.((((....)))).))).)))).))))).)))))..))........(((....)))...((....))... ( -27.00)
>consensus
ACGGAGCAAUGGCUGUGUGCAUAAAAAUCGUUUGGUUAUUGUUGCAGGCGGCAGUUGCGGCUAUAGCAAUGACAGGGGUCACAGCAACAGCGUU
.....(((((.(((((.(((((((.((((....)))).))).)))).))))).))))).(((.(.((..((((....))))..)).).)))... (-26.54 = -27.22 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:14 2006