Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 27,750,714 – 27,750,808 |
Length | 94 |
Max. P | 0.565453 |
Location | 27,750,714 – 27,750,808 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -29.15 |
Consensus MFE | -20.10 |
Energy contribution | -20.05 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.05 |
Mean z-score | -1.68 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27750714 94 - 27905053 UG------------UCCCUGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUGGGGUCGCUAGAU .(------------.(((..(....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))...)..))).)....... ( -29.60) >DroPse_CAF1 72980 99 - 1 UGUGC------GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUUGC-CCCCAGGAU .....------.(((...(((....(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))......))-)...))).. ( -29.10) >DroGri_CAF1 77442 101 - 1 GGUGUGACCGUUGCCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCG---GU- ((.....))...((((..((((...(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).....)))-)))---))- ( -28.10) >DroWil_CAF1 75633 95 - 1 U----------GCCUUCUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCAUGGGAU .----------.(((...((((...(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).....)))-)...))).. ( -26.40) >DroMoj_CAF1 80783 102 - 1 GGUAGGGCAGAGCCCGUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU-CCG---GUU ....((((.(((((....)))))..(((((((((((..(((...((.((((((.......))))))..)).)))...)))))))))))......))-)).---... ( -31.90) >DroPer_CAF1 72713 99 - 1 UGUGC------GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCCACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUACCAAAUCGUGGC-CCCCAGGAG .....------(((....)))....((((...))))....((((....(((((((.....((((...(((((......)))))))))...))))))-)....)))) ( -29.80) >consensus UGUG_______GCCUUUUGGCUUCAUUGCUAUGCAAACUGCUCCCAAUGGCUACGUUUAAUGGUCAAGUGUGUAAAAUUGCAUAGCAAAUCGUAGU_CCGC_GGAU .........................(((((((((((..(((...((.((((((.......))))))..)).)))...))))))))))).................. (-20.10 = -20.05 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:09 2006