| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,733,361 – 27,733,451 |
| Length | 90 |
| Max. P | 0.608413 |
| Location | 27,733,361 – 27,733,451 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 88.90 |
| Mean single sequence MFE | -18.22 |
| Consensus MFE | -14.02 |
| Energy contribution | -14.18 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.68 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608413 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27733361 90 + 27905053 AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAG-UUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGG-----CAGCAACAGA----A ....(((((.....))))).............((((.(-(((((.(((((..........))))).))))))))))((..-----..))......----. ( -19.70) >DroPse_CAF1 52812 84 + 1 AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAG-UUGGCAGUAAUAGCAUUUUUAAUUAUGGCCAACUCAUGCGC-----GU---ACC------- ....(((((.....)))))............(((((.(-(((((.(((((..........))))).)))))))))))...-----..---...------- ( -18.90) >DroWil_CAF1 54259 96 + 1 AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAGCUUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGCGCGGCCAACAAGAUG----A ....(((((.....)))))............(((((.(.(((((.(((((..........))))).)))))))))))..................----. ( -15.10) >DroYak_CAF1 48446 90 + 1 AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAG-UUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGG-----CAGCAACAGA----A ....(((((.....))))).............((((.(-(((((.(((((..........))))).))))))))))((..-----..))......----. ( -19.70) >DroAna_CAF1 48039 91 + 1 AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAG-UUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGG-----CA---ACAGAACUGA ....(((((.....)))))............(((((.(-(((((.(((((..........))))).))))))))))).(.-----..---.)........ ( -20.20) >DroPer_CAF1 53253 84 + 1 AAAAUAGCAAAAAUUACUAAUUAAAAAUUUAUAUGAAG-UUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGC-----GU---ACA------- ......((..(((((..........))))).(((((.(-(((((.(((((..........))))).))))))))))).))-----..---...------- ( -15.70) >consensus AAAAUAGCAAAAAUUGCUAAUUAAAAAUUUAUAUGAAG_UUGGCAGUAAUAGCAUUUUUAAUUAUAGCCAACUCAUGCGC_____CA___ACAGA____A ....(((((.....)))))............(((((.(.(((((.(((((..........))))).)))))))))))....................... (-14.02 = -14.18 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:09 2006