Locus 10326

Sequence ID 3R_DroMel_CAF1
Location 27,729,657 – 27,729,752
Length 95
Max. P 0.747167
window16437

overview

Window 7

Location 27,729,657 – 27,729,752
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 76.61
Mean single sequence MFE -25.98
Consensus MFE -14.42
Energy contribution -14.70
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.77
Structure conservation index 0.56
SVM decision value 0.47
SVM RNA-class probability 0.747167
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27729657 95 + 27905053
AUUUUUUGGCUGUU-UGUUGGUUU-UCAAAUUUGCGGUAAAUCGGAAACGCGCCGUAAGUUAAAUGAACUC--GCC-CGCACCCCGUC-GCAUUCAGAGCG
.......(((.(..-(((.(((.(-(((((((((((((....((....)).))))))))))...))))...--)))-.)))..).)))-((.......)). ( -25.80)
>DroVir_CAF1 50686 88 + 1
AUU-UUUGGUUGCU-UGUUGGUUU-UCAAAUUUGCGGUAAAUCGGAAGUGCGCCGCAAGUUAAAUGAACUU--GCCACUGACGGCGUC-CUAUU-------
...-...((.((((-.((((((.(-(((((((((((((....(....)...))))))))))...))))...--))))...)))))).)-)....------- ( -26.00)
>DroPse_CAF1 48903 90 + 1
AUU-UUUGGCUGUU-UGUUGGUUU-UCAAAUUUGCGGUAAAUCGGAAACGCGCCGUAAGUUAAAUGAAC------C-CACAGCCCGNN-NNNNNNNNNNNN
...-...((((((.-.(((.((((-...((((((((((....((....)).)))))))))))))).)))------.-.))))))....-............ ( -28.00)
>DroGri_CAF1 50867 88 + 1
AUU-UUUGGUUGCU-UGUUGGUUU-UCAAAUUUGCGGUAAAUCGGAAGUACGCCGCAAGUUAAAUGAACUU--GCCCCGGACGGCGUC-GCUUU-------
...-(((((..((.-.(((.((((-...((((((((((....(....)...)))))))))))))).)))..--)).))))).......-.....------- ( -25.20)
>DroWil_CAF1 49834 96 + 1
AAUUUUUGUCUGUUUUGUUGGUUUUUGAAAUUUGCGGUAAAUCGGAAGCACGCCGUAGGUUAAAUGAACUCCCGUC-CACACCCGGAC-CCA---AAACCG
...........((((((..(((((....((((((((((....(....)...))))))))))....)))))...(((-(......))))-.))---)))).. ( -23.80)
>DroMoj_CAF1 52715 89 + 1
AAU-UUUGGUUGCU-UGUUGGUUU-UCAAAUUUGCGGUAAAUCGGAAGUGCGCCGCAAGUUAAAUGAACUU--GCCACAGACGGCGUCCCCAUU-------
...-..(((..((.-.(((.((((-...((((((((((....(....)...)))))))))))))).)))..--(((......)))))..)))..------- ( -27.10)
>consensus
AUU_UUUGGCUGCU_UGUUGGUUU_UCAAAUUUGCGGUAAAUCGGAAGCGCGCCGCAAGUUAAAUGAACUU__GCC_CACACCCCGUC_CCAUU_______
.......(((......(((.((((....((((((((((....(....)...)))))))))))))).)))....)))......................... (-14.42 = -14.70 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:08 2006