Locus 10324

Sequence ID 3R_DroMel_CAF1
Location 27,724,379 – 27,724,469
Length 90
Max. P 0.609686
window16434

overview

Window 4

Location 27,724,379 – 27,724,469
Length 90
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 76.93
Mean single sequence MFE -23.13
Consensus MFE -10.34
Energy contribution -10.15
Covariance contribution -0.19
Combinations/Pair 1.20
Mean z-score -2.05
Structure conservation index 0.45
SVM decision value 0.15
SVM RNA-class probability 0.609686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27724379 90 + 27905053
CGCUGCUCCAUUUUGCGUUCGCGUCAUGUUUGGUAAGUAAUUGAUUUAUAUAUAA-AACAUGUUGCAUGCCACAAC-----GAU-UGCAGCUUGUUG
.(((((........((((..(((.(((((((.(((.((((.....)))).))).)-)))))).)))))))......-----...-.)))))...... ( -23.37)
>DroVir_CAF1 44563 73 + 1
---------------UGUGCGCGUCAUGUUUGGCAAGUAAUUGAUUUAUAU--AA-AACAUGUUGCAUGCCA-AGC-----GACUUGCAGCUUGUUG
---------------..((((.(((..((((((((.(((((((.(((....--))-).)).))))).)))))-)))-----))).))))........ ( -22.20)
>DroPse_CAF1 42857 94 + 1
CCAUUCAUCGUG--GUGCGCGCUUCAUGUUUGGUAAGUAAUUGAUUUAUAUAUAAAAACAUGUUGCAUGCCACAACGCAGCGAU-UGCAGCUUGUUG
.........(((--((..(((...(((((((.(((.((((.....)))).)))..))))))).)))..)))))((((.(((...-....))))))). ( -23.90)
>DroMoj_CAF1 45005 74 + 1
---------------UGUGCGUGUCAUGUUUGGCUUGUAAUUGAUUUAUAU--AAAAACAUGUUGCAUGCCA-AAC-----GACAUGCAGCUUGUUG
---------------..((((((((..(((((((.((((((((.(((....--.))).)).)))))).))))-)))-----))))))))........ ( -26.80)
>DroAna_CAF1 38681 82 + 1
UGUUGCC------UCCGCUCGCGUCGUGUUUGGUAAGUAAUUGAUUUAUAUAUAAAAACAUGUUGCAUGCCA---C-----GAU-UGCAGCUUGUUG
.(((((.------((.((..(((.(((((((.(((.((((.....)))).)))..))))))).)))..))..---.-----)).-.)))))...... ( -18.60)
>DroPer_CAF1 43337 94 + 1
CCAUUCAUCGUG--GUGCGCGCUUCAUGUUUGGUAAGUAAUUGAUUUAUAUAUAAAAACAUGUUGCAUGCCACAACGCAGCGAU-UGCAGCUUGUUG
.........(((--((..(((...(((((((.(((.((((.....)))).)))..))))))).)))..)))))((((.(((...-....))))))). ( -23.90)
>consensus
C__U_C________GUGCGCGCGUCAUGUUUGGUAAGUAAUUGAUUUAUAUAUAAAAACAUGUUGCAUGCCA_AAC_____GAU_UGCAGCUUGUUG
................((..((..(((((((.....((((.....))))......)))))))..))..))........................... (-10.34 = -10.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:05 2006