| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,713,224 – 27,713,320 |
| Length | 96 |
| Max. P | 0.693434 |
| Location | 27,713,224 – 27,713,320 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.45 |
| Mean single sequence MFE | -21.10 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.07 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.693434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27713224 96 - 27905053 AUAUACUAUAUUAUUGUAUAUUGUUGUGUACUACGACCAUGAACGCGGCACUAGCAAAUGUAAAAACCUUUGUUGUUAUGUUAGCUGCUUUUGUGU----- ((((((.........)))))).((((((...))))))((..((.((((((((((((((.((....)).)))))))....))..))))).))..)).----- ( -19.30) >DroSec_CAF1 36064 88 - 1 --AUAUUAUAUUUUUGUAUAU------AUACUACGAUCAUGAACGCGGCAUUAGCAAAUGUAAAAACCUUUGUUG-----UCAGCUGCUUUUGUGUCGGCC --....(((((....))))).------......(((.((..((.(((((..(((((((.((....)).)))))))-----...))))).))..)))))... ( -22.00) >DroSim_CAF1 36190 88 - 1 --AUAUUAUAUUUUUGUAUAU------AUACUACGAUCAUGAACGCGGCAUUAGCAAAUGUAAAAACCUUUGUUG-----UCAGCUGCUUUUGUGUCGGCC --....(((((....))))).------......(((.((..((.(((((..(((((((.((....)).)))))))-----...))))).))..)))))... ( -22.00) >consensus __AUAUUAUAUUUUUGUAUAU______AUACUACGAUCAUGAACGCGGCAUUAGCAAAUGUAAAAACCUUUGUUG_____UCAGCUGCUUUUGUGUCGGCC ...............((((........))))..(((.((..((.(((((..(((((((.((....)).)))))))........))))).))..)))))... (-15.62 = -16.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:03 2006