Locus 10320

Sequence ID 3R_DroMel_CAF1
Location 27,707,462 – 27,707,581
Length 119
Max. P 0.585648
window16428

overview

Window 8

Location 27,707,462 – 27,707,581
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.39
Mean single sequence MFE -40.20
Consensus MFE -35.28
Energy contribution -35.40
Covariance contribution 0.12
Combinations/Pair 1.19
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value 0.10
SVM RNA-class probability 0.585648
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27707462 119 + 27905053
A-ACUUACCAAUUCCGCCGGCCAGCACAGUGCCCGGCUCCAGUUUGGCCUUCUUUGUGGCCAGGUCCUGAUUGUUAUUGUCGGAAGCGGGCGCCAUGACCGCUGCUUGACUCAAAAGUUC
(-((((..(((((..((((((((.((.((.(((..((....))..)))...)).))))))).)))...))))).....(((((.(((((.........)))))..)))))....))))). ( -37.40)
>DroVir_CAF1 35655 120 + 1
AAACUUACCAAUUCCGCCGGCCAGCACGGUGCUCGAAUCCAGUUUGGCCUUCUUUGUAGCCAGAUCCUGAUUAUUAUUGUCGGAAGCGGGCGCCAUGACUGCUGCUUGACUCAAAAGUUC
.(((((......((...((((.((((.((((((((..(((.(((((((..........)))))))...(((.......))))))..)))))))).)).))))))...)).....))))). ( -35.70)
>DroGri_CAF1 35546 120 + 1
AAACUUACCAAUUCCGCCGGCAAGCACGGUGCUCGAAUCCAGCUUGGCCUUCUUUGUGGCCAGGUCCUGAUUAUUAUUGUCAGAGGCGGGCGCCAUGACUGCUGCUUGACUCAAAAGUUC
.(((((......((...(((((..((.((((((((...((.((((((((........)))))))).(((((.......))))).)))))))))).))..)))))...)).....))))). ( -43.20)
>DroWil_CAF1 35074 120 + 1
AAACUUACCAAUUCCGCCGGCCAGCACGGUGCUCGAAUCCAGUUUGGCCUUCUUUGUGGCCAGAUCCUGAUUAUUAUUGUCGGAGGCGGGCGCCAUGACUGCUGCUUGGCUCAAAAGUUC
...............(((((.(((((.((((((((..(((.((((((((........))))))))...(((.......))))))..)))))))).....))))).))))).......... ( -46.30)
>DroMoj_CAF1 35738 120 + 1
AAACUUACCAAUUCCGCCAGCCAGCACGGUGCUCGAAUCCAGUUUGGCCUUCUUUGUGGCCAGAUCCUGAUUAUUAUUGUCGGAAGCGGGCGCCAUGACUGCAGCUUGACUCAAAAGUUC
.(((((.........((..((.((((.((((((((..(((.((((((((........))))))))...(((.......))))))..)))))))).)).)))).)).........))))). ( -38.97)
>DroAna_CAF1 31195 120 + 1
AGACUUACCGAUUCCGCCGGCCAGCACGGUGCCCGGCUCCAACUUCGCCUUCUUUGUGGCCAGGUCCUGGUUGUUGUUGUCGGAGGCAGGCGCCAUGACUGCUGCUUGACUCAAAAGUUC
.(((((..((((..((.(((((((...((.((...)).)).((((.(((........))).)))).))))))).))..))))(((.((((((.((....)).)))))).)))..))))). ( -39.60)
>consensus
AAACUUACCAAUUCCGCCGGCCAGCACGGUGCUCGAAUCCAGUUUGGCCUUCUUUGUGGCCAGAUCCUGAUUAUUAUUGUCGGAAGCGGGCGCCAUGACUGCUGCUUGACUCAAAAGUUC
.(((((......((...((((.((((.((((((((..(((.((((((((........))))))))...(((.......))))))..)))))))).)).))))))...)).....))))). (-35.28 = -35.40 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:54:00 2006