| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,224,309 – 3,224,422 |
| Length | 113 |
| Max. P | 0.606473 |
| Location | 3,224,309 – 3,224,422 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.86 |
| Mean single sequence MFE | -30.81 |
| Consensus MFE | -18.31 |
| Energy contribution | -17.98 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3224309 113 + 27905053 UCGCUCGCCUCGGCGCCAUUAAUCCAGGUGAAAUGAAAGGUGAGCGAUUUUUCCG-AAAUCCAAUUUGUUAUAA-AAGGGAGAGGACGCUG-----AGAGAAAGAGCGAGGAGUCCUGUG ((((((((((((.((((.........))))...)))..)))))))))...((((.-...(((..(((.((....-)).)))..)))((((.-----........)))).))))....... ( -32.50) >DroVir_CAF1 55911 116 + 1 CUGUUCGCCUCGACACCAUUAAUCCGCCUGAAAUGAAAGGUGAGCGAUUUUUUCGCAAAUCCAAUUUGCUAAAA-AAAAAAGAAGAAAAUAGGAAAAGUAAAAGAGAAAAGAGCAC---A .(((((..(((.((..........(((((........))))).((((.....))))...(((.((((.((....-........)).)))).)))...))....)))....))))).---. ( -22.60) >DroGri_CAF1 47327 110 + 1 CUGCUCGCCUCGACACCAUUAAUCCGCCUGAAAUGAAAGGUGAGCGUUUUUUUUGGAAAUCCAAUUUGUUGUAA-UAAAAAAAA------UGGAAAAGUAAAAGAGAAAAGAGCAC---G .(((((..(((.((.(((((....(((((........))))).(((......((((....)))).....)))..-.......))------)))....))....)))....))))).---. ( -23.70) >DroSec_CAF1 48912 113 + 1 UUGCUCGCCUCGGCGCCAUUAAUCCAGGUGAAAUGAAAGGUGAGCGAUUUUUCCG-AAAUCCAAUUCGUUAUAA-AAGGGAGAGGGCGCUG-----AGAGAAAGAGCGAGGGGUCCUGUG ((((((.((((((((((.....(((...((.((((((..(.((.((.......))-...)))..)))))).)).-...)))...)))))))-----)).)...))))))........... ( -37.10) >DroEre_CAF1 43294 114 + 1 UCGCUCGCCUCGGCGCCAUUAAUCCAGGUGAAAUGAAAGGUGAGCGAUUUUUCCG-AAAUCCAAUUUGUUAUAAAAAGGGACAGGAAGCUG-----AGAGAAAGAGCGAGGAGUCCUGCG ((((((((((((.((((.........))))...)))..)))))))))(((((((.-...(((..(((......)))..)))(((....)))-----.).))))))((.(((...))))). ( -34.30) >DroYak_CAF1 34462 114 + 1 UCGCUCGCCUCGGCGCCAUUAAUCCAGGUGAAAUGAAAGGUGAGCGAUUUUUCCA-AAAUCCAAUUUGUUAUAAAAAGGGCGAGGAAGCUG-----AGGGAAAGAGCGAGGAGUCUUGUG ((((((((((((.((((.........))))...)))..)))))))))(((((((.-........((((((........)))))).......-----..)))))))(((((....))))). ( -34.67) >consensus UCGCUCGCCUCGGCGCCAUUAAUCCAGGUGAAAUGAAAGGUGAGCGAUUUUUCCG_AAAUCCAAUUUGUUAUAA_AAGGGAGAGGAAGCUG_____AGAGAAAGAGCGAGGAGUCCUGUG ((((((((((((.((((.........))))...)))..)))))))))(((((((.......................))))))).................................... (-18.31 = -17.98 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:50 2006