Locus 10319

Sequence ID 3R_DroMel_CAF1
Location 27,706,993 – 27,707,085
Length 92
Max. P 0.519224
window16427

overview

Window 7

Location 27,706,993 – 27,707,085
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -29.10
Consensus MFE -15.73
Energy contribution -16.70
Covariance contribution 0.97
Combinations/Pair 1.17
Mean z-score -1.81
Structure conservation index 0.54
SVM decision value -0.03
SVM RNA-class probability 0.519224
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27706993 92 + 27905053
GGGG--UACUCAAGUGGCCAGGCGACUUUGUUGCCAAUGUUGAAGGCUUAAGCCUAA------UACUGCACUGGGACCACCCACAAG---CCAACUUAACAGA
.((.--(((....))).)).((((((...))))))..((((((.(((((..((....------....))..((((....)))).)))---))...)))))).. ( -28.20)
>DroSec_CAF1 29724 88 + 1
GGGG--UACUCAAGUGCCCAGGCGACUUUGUUGCCAAUGUUGAAGGCUUAAGCCUAA------UACUGCACUGGCACC----ACAAA---CCAACUUAACAGA
.(((--(((....)))))).((((((...))))))..((((((((((....))))..------...(((....)))..----.....---.....)))))).. ( -28.60)
>DroSim_CAF1 29856 88 + 1
GGGG--UACUCAAGUGCCCAGGCGACUUUGUUGCCAAUGUUGAAGGCUUAAGCCUAA------UACUGCACUGGCACC----ACAAA---CCAACUUAACAGA
.(((--(((....)))))).((((((...))))))..((((((((((....))))..------...(((....)))..----.....---.....)))))).. ( -28.60)
>DroEre_CAF1 30263 94 + 1
GGGG--UACUCAAGUGCACAGGCGACUUUGUGGCCA-UGCUGAAGGCUUAAGCCUAAUGCUAAUGCUGCACUGAGACC---CACAAG---CCAAGUUCACAGG
.(((--(.((((.((((((((((.((...)).))).-.((...((((....))))...))...)).))))))))))))---).....---............. ( -33.90)
>DroYak_CAF1 30321 87 + 1
GGGG--UACUCAAGUGCCCAAGCGACUUUGUGGCCA-GGUAGAGGGCUUAAGCCUAA------UGCUGCACUGAGACC---C-CAAG---CCAAAUUCACAGA
((((--(.((((.((((....((.((...)).))..-((((..((((....))))..------)))))))))))))))---)-)...---............. ( -32.60)
>DroAna_CAF1 30745 92 + 1
GGACUUUGCUCAAGUGCCCUGAACACUUUGUGGCCG-CGUUGCAGGCUUAAGACUAA------UGCUGCACUGGGAGA----ACCAAGCGCCGUGUUUUCGGA
((((((.....)))).))(((((.((....((((.(-(..(((((.(..........------.)))))).(((....----.))).)))))).)).))))). ( -22.70)
>consensus
GGGG__UACUCAAGUGCCCAGGCGACUUUGUGGCCA_UGUUGAAGGCUUAAGCCUAA______UACUGCACUGGGACC____ACAAA___CCAACUUAACAGA
........((((.((((...((((((...))))))........((((....))))............))))))))............................ (-15.73 = -16.70 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:59 2006