Locus 10318

Sequence ID 3R_DroMel_CAF1
Location 27,696,488 – 27,696,585
Length 97
Max. P 0.932597
window16426

overview

Window 6

Location 27,696,488 – 27,696,585
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 92.84
Mean single sequence MFE -32.91
Consensus MFE -27.64
Energy contribution -28.70
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -2.33
Structure conservation index 0.84
SVM decision value 1.22
SVM RNA-class probability 0.932597
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27696488 97 - 27905053
GGGAGGACGAAAAUGGUGCCGAGGCAAGUGCCGGUCCACUGCAGCCGAUUGGUGCAAGCUGCACUCACCAAACAACUGGCACACACUCCCAAA-AAAA
(((((..........((((((.(((....)))(((....((((((............))))))...))).......))))))...)))))...-.... ( -33.02)
>DroSec_CAF1 18978 98 - 1
GGGAGGACGCAAAUGGUGCCGAGGAAAGUGCCGGUCCACUGCAGCCGAUUGGUGCAAGCUGCACUCGCCAAACAACUGGCACACACUCCCAAAAAAAA
(((((...(((....(..((((((..((((......))))....))..))))..)....)))....((((......)))).....)))))........ ( -32.60)
>DroSim_CAF1 19082 98 - 1
GGGAGGACGCAAAUGGUGCCGAGGAAAGUGCCGGUCCACUGCAGCCGAUUGGUGCAAGCUGCACUCGCCAAACAACUGGCACACACUCCCAAAAAAAA
(((((...(((....(..((((((..((((......))))....))..))))..)....)))....((((......)))).....)))))........ ( -32.60)
>DroEre_CAF1 19179 95 - 1
GGGAGAACGACAAUGGUGGCGAGGCAAGUGCCGGUCCAC-GCAGCCGAUUGGUGCAGGCUGCACCAGCCAAACAACUUGCA-ACACUCCCAAA-AAAA
(((((.....(((((.((((..(((....)))(((....-((((((..........))))))))).))))..))..)))..-...)))))...-.... ( -33.40)
>consensus
GGGAGGACGAAAAUGGUGCCGAGGAAAGUGCCGGUCCACUGCAGCCGAUUGGUGCAAGCUGCACUCGCCAAACAACUGGCACACACUCCCAAA_AAAA
(((((.........(((((...(((..(..((((((..........))))))..)..)))))))).((((......)))).....)))))........ (-27.64 = -28.70 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:58 2006