| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,666,733 – 27,666,838 |
| Length | 105 |
| Max. P | 0.817883 |
| Location | 27,666,733 – 27,666,838 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -30.47 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27666733 105 + 27905053 UCGCCUCUUCAUCGUCCUCGGAAACGGAGACCAAGACGUACAUAGGUGGCACCACUGCAGCCAGUGG------AGCCAUUA------CCACCACCAUCUACACCAACGACACCAAGA ..((.((((....(((..((....))..))).)))).)).....((((((.((((((....))))))------.)))))).------.............................. ( -29.30) >DroVir_CAF1 55788 111 + 1 UCGCCUCGUCGUCGUCCUCGGAAACGGAGACAAAGACUUACAUAGGCGGCACCACAGUUGCCAGCACCACAGUUGCCAACA------CCACAACAACCUACACGAACGAAUCUAGAA (((..(((((((((((..((....))..)))...(.....)...))))))......((((.((((......)))).)))).------................)).)))........ ( -27.80) >DroGri_CAF1 55252 105 + 1 UCGCCUCGUCGUCGUCCUCGGAGACGGAGACAAAGACCUACAUAGGCGGCACCACAGUUGCCAGCGC------GGCCAGCA------CCACCACAACCUACACAAACGAAUCCAGGA ..(((.(((.((((((..((....))..)))...))).......((((((......)))))).))).------))).....------.........(((..............))). ( -28.34) >DroEre_CAF1 48772 111 + 1 UCGCCUCUUCAUCAUCCUCGGAAACGGAGACGAAGACGUACGUAGGUGGCACCACUGCGGCCAGUGG------GGCCAUCACCAUCACCACCACCACGUACACCAACGACACCAAGA (((..(((((.((.(((..(....)))))).))))).((((((.(((((..((((((....))))))------((......)).......))))))))))).....)))........ ( -38.50) >DroWil_CAF1 53345 98 + 1 UGGCCUCGUCUUCAUCCUCGGAAACGGAGACCAAAACCUACAUUGGCGGCACCACAGUGGCCAGUUC------GGCCAGCA------CCACCACAACCUAUACGAAUGAC------- (((((..((((((.((....))...))))))..........((((((.((......)).))))))..------)))))...------.......................------- ( -26.50) >DroYak_CAF1 48588 105 + 1 UCGCCUCUUCAUCGUCCUCGGAAACGGAGACCAAGACCUACAUAGGCGGCACCACUGCGGCCAGUGG------GGCCGUCA------CCACCACCACCUACACCAACGACACCAAGA (((..((((....(((..((....))..))).))))........((((((.((((((....))))))------.)))))).------...................)))........ ( -32.40) >consensus UCGCCUCGUCAUCGUCCUCGGAAACGGAGACCAAGACCUACAUAGGCGGCACCACAGCGGCCAGUGC______GGCCAUCA______CCACCACAACCUACACCAACGACACCAAGA ..(((........(((..((....))..))).............(((.((......)).)))...........)))......................................... (-18.41 = -18.60 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:51 2006