| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,660,754 – 27,660,859 |
| Length | 105 |
| Max. P | 0.561147 |
| Location | 27,660,754 – 27,660,859 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.99 |
| Mean single sequence MFE | -44.98 |
| Consensus MFE | -21.48 |
| Energy contribution | -21.82 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27660754 105 + 27905053 GCCAAGUUACUACUACUAUAACAGACCUGCCAUCGGCAGUAUGUCGAGGGGAUCAGG-----U-GGA---GCAG---GCGGAGGAGUUGGCGCAGCUUCA---ACGGCUGCCUUGCUGGC ((((.((.................(((((((.(((((.....)))))..))..))))-----)-((.---((((---.((..(((((((...))))))).---.)).)))))).)))))) ( -37.60) >DroVir_CAF1 50296 102 + 1 UCCUAGUUACUAUUACUAUAACCGACCCGCCAUAGGCAGUAUGCCACGCGGCGCUGG-----A-GGC---GUGG---GUAGU------GGAGCAGCUGCAGCGGCAGCUGCAAUGUUGGC ...((((.......))))...(((((((((....(((.....)))((.(.((((...-----.-.))---)).)---)).))------)).((((((((....))))))))...))))). ( -39.80) >DroPse_CAF1 52039 102 + 1 UCCUAGCUACUACUACUACAACAGGCCCGCCAUUGGCAGCAUGCCGCGAGGUGGCGG-----U-GGGCACGUGA---GCGGA------GGAGCAGCUGCC---ACGGCUGCCCUGCUGGC ..(((((.....(..((...((..(((((((...(((.....)))((......))))-----)-))))..)).)---)..)(------((.(((((((..---.))))))))))))))). ( -46.00) >DroWil_CAF1 46975 102 + 1 UCCAAGUUAUUAUUACUACAACAGACCCGCCAUUGGCAGCAUGCCUCGUGGAGCUGGCCAUGUGGGA---GCCG---GC---------GGAGCAGCUGCA---GCAGCUGCCAUGCUGGC .........................(((((...(((((((...((....)).))).)))).))))).---((((---((---------(..(((((((..---.)))))))..))))))) ( -44.10) >DroMoj_CAF1 55052 105 + 1 GCCCAGCUACUACUACUAUAACCGGCCUGCCAUAGGCAGCAUGCCGCGUGGCUCAAG-----C-GGC---GUGGGAGGCAGC------GGAGCCGCUGCAGCCGCAGCUGCCAUGCUGGC ..(((((................((....))...((((((.((((((((.((....)-----)-.))---)))((..(((((------(....))))))..)))))))))))..))))). ( -54.10) >DroPer_CAF1 56080 102 + 1 UCCCAGCUACUACUACUACAACAGGCCCGCCAUUGGCAGCAUGCCGCGUGGUGGCGG-----U-GGGCACGUGA---GCGGA------GGAGCAGCUGCC---ACGGCUGCCCUGCUGGC ..(((((.....(..((...((..(((((((...(((.....)))((......))))-----)-))))..)).)---)..)(------((.(((((((..---.))))))))))))))). ( -48.30) >consensus UCCAAGCUACUACUACUACAACAGACCCGCCAUUGGCAGCAUGCCGCGUGGAGCAGG_____U_GGA___GUGG___GCGGA______GGAGCAGCUGCA___ACAGCUGCCAUGCUGGC ..(((((....................((((...(((.....)))....))))......................................(((((((......)))))))...))))). (-21.48 = -21.82 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:50 2006