Locus 10312

Sequence ID 3R_DroMel_CAF1
Location 27,655,111 – 27,655,201
Length 90
Max. P 0.609443
window16415

overview

Window 5

Location 27,655,111 – 27,655,201
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 81.24
Mean single sequence MFE -30.02
Consensus MFE -19.74
Energy contribution -20.22
Covariance contribution 0.47
Combinations/Pair 1.16
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value 0.15
SVM RNA-class probability 0.609443
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27655111 90 - 27905053
ACAACCACGAGGACAACACAAGUGACACAAUCCGUAUUGUGGCGGUGACUCCGUCAGCCCAGGAGAGGGCUAAGGGUCAUGGAG----CGGGAG
.....(((..(.......)..)))......(((((.(..(((((....).((...(((((......)))))..))))))..).)----)))).. ( -28.50)
>DroSec_CAF1 44210 90 - 1
ACAACCACGAGGACAACACAAGUGACACAAGCCGCAUUGUGGCGGUGACUCCGUCAGCCCAGGAGACGGCUGAGGGUCAUGGAG----CGGGAA
....((.((.......((((((((........))).))))).(.(((((.((.((((((..(....)))))))))))))).)..----)))).. ( -32.50)
>DroSim_CAF1 40163 90 - 1
ACAACCACGAGGACAACACAAGUGACACAAGCCGCAUUGUGGCGGUGACUCCGUCAGCCCAGGAGACGGCUGAGGGUCAUGGAG----CGGGAA
....((.((.......((((((((........))).))))).(.(((((.((.((((((..(....)))))))))))))).)..----)))).. ( -32.50)
>DroEre_CAF1 37060 90 - 1
ACAACCACGAGGACAGCACAAGUGACACAAGCCGCAUUGUGGCGGUGACUCCGACAGCCCAGGAGACGGCUGAGGGUCAUGGAG----CGGAAC
.....(((..(.......)..))).......((((.(..(((((....).((..(((((..(....)))))).))))))..).)----)))... ( -29.60)
>DroYak_CAF1 36200 90 - 1
ACAACCACGAGGACAACACAAGUGACACAAGCCGCAUUGUGGCGGUGACUCCGACAGCCCAGGAGACGGCUGAGGGUCAUGGUG----CGGGAA
.....(((..(.......)..))).......((((((..(((((....).((..(((((..(....)))))).))))))..)))----)))... ( -34.40)
>DroPer_CAF1 48640 77 - 1
ACAACAAUG-----------CUUGAAACAAGCCGCACUGUGGCGUUGAUUGUGACAGCA------ACUGCUGGGGCAGAGGAAGAAGGCAGAAG
.......((-----------(((....((((((((...))))).))).((((..((((.------...))))..)))).......))))).... ( -22.60)
>consensus
ACAACCACGAGGACAACACAAGUGACACAAGCCGCAUUGUGGCGGUGACUCCGACAGCCCAGGAGACGGCUGAGGGUCAUGGAG____CGGGAA
....((........................(((((...))))).(((((((...(((((........))))).))))))).........))... (-19.74 = -20.22 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:49 2006