Locus 10310

Sequence ID 3R_DroMel_CAF1
Location 27,648,053 – 27,648,156
Length 103
Max. P 0.679356
window16412

overview

Window 2

Location 27,648,053 – 27,648,156
Length 103
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 88.08
Mean single sequence MFE -34.18
Consensus MFE -26.52
Energy contribution -26.92
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.78
SVM decision value 0.30
SVM RNA-class probability 0.679356
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27648053 103 + 27905053
AGUCCUAAAACGAAAUUAACCCACGGCCUGCAGUCGUACUGAAGGCAACAUCCACGCACACAU--------CCACAUCACGACGCCAGUGCGCUAGUGUGCGUGGGUAUCU
.........................((((.(((.....))).))))...((((((((((((.(--------(........))(((....)))...)))))))))))).... ( -32.50)
>DroSec_CAF1 28353 103 + 1
AGUGCUACAACGAAAUUAACCCACGACCUGCAGUCGUACUGAAGGCAGCAUCCACGCACACAU--------CCACAUCGCGACGCCGGUGCGCUAGUGUGCGUGGGUAUCU
...(((....((...........)).(((.(((.....))).))).)))((((((((((((..--------.(.(((((......))))).)...)))))))))))).... ( -33.80)
>DroSim_CAF1 33021 103 + 1
AGUGCUACAACGAAAUUAACCCACGACCUGCAGUCGUACUGAAGGCAGCAUCCACGCACACAU--------CCACAUCGCGACGCCGGUGCGCUAGUGUGCGUGGGUAUCU
...(((....((...........)).(((.(((.....))).))).)))((((((((((((..--------.(.(((((......))))).)...)))))))))))).... ( -33.80)
>DroEre_CAF1 28322 111 + 1
AGUGCUGGGGCGAAAUUAACCCACGAACUGCAGUCCUACCGAAGGCAGCAUCCACGCACACAUACACAUACACACAUCACAACGCCGGUGCGCUGGUGUGCGUGGGUAUCU
..((.((((..........))))))..((((..((.....))..)))).((((((((((((((....))..........((.(((....))).)))))))))))))).... ( -33.90)
>DroYak_CAF1 28854 107 + 1
AGUGCUAAAACGAAAUUAACCCACGACCUGCAGUCCCACUGAAGGCAGCAUCCACGCACACACAC----AUUCGCAUCUCGACGCCGGUGCGCUGGUGUGCGUGGGUAUCU
...(((....((...........)).(((.(((.....))).))).)))((((((((((((.((.----...((((((........)))))).)))))))))))))).... ( -36.90)
>consensus
AGUGCUAAAACGAAAUUAACCCACGACCUGCAGUCGUACUGAAGGCAGCAUCCACGCACACAU________CCACAUCACGACGCCGGUGCGCUAGUGUGCGUGGGUAUCU
...........................((((..((.....))..)))).((((((((((((.............(.....).(((....)))...)))))))))))).... (-26.52 = -26.92 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:46 2006