Locus 10308

Sequence ID 3R_DroMel_CAF1
Location 27,642,208 – 27,642,325
Length 117
Max. P 0.623562
window16410

overview

Window 0

Location 27,642,208 – 27,642,325
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 76.17
Mean single sequence MFE -31.30
Consensus MFE -18.72
Energy contribution -21.24
Covariance contribution 2.52
Combinations/Pair 1.14
Mean z-score -1.65
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.623562
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27642208 117 + 27905053
GUCGAUGACAGUGAUCAUCCUGAU---GAUGAUGAUGAAUAAUCUGACUGAGGAUGGCAUAGGGGCCACUCAAUGUUAAGCCCUUGUGUGUUGAUUGUUAUUGGCUCCUGUUUUAGUAUG
((((((((((((.(.((((((.(.---...(((........)))....).))))))((((((((((.((.....))...))))))))))..).))))))))))))............... ( -39.00)
>DroSec_CAF1 22434 120 + 1
GUCGAUGACAGUGAUCAUCCCGAUGAUGAUGAUGAUGAAUAAUCUGACUGAGGAUGGCAUAGGGGCCACUCAAUAUUAAGCCAUUGGGUGUUGACUGUUAUUGGCUCCUGUCUUAUUAUG
((((((((((((.(.((.(((((((.(((((..(((.....)))....((((..((((......)))))))).)))))...))))))))).).))))))))))))............... ( -38.30)
>DroSim_CAF1 27146 116 + 1
GUCGAUGACAGUGAUCAUCCCGAUGAUGAUGAUGAUGAAUAAUCUGACUGAGGAUGGCAUAGGGGCCACUCAAUAUUAAGCCAUUGGGUGUUGACUGUUAUUAGCUCCUGUUUUGC----
((..((((((((.(.((.(((((((.(((((..(((.....)))....((((..((((......)))))))).)))))...))))))))).).))))))))..))...........---- ( -34.60)
>DroEre_CAF1 22410 103 + 1
UUAUAUGACAAUGAUCAUGCUGAU---GAUGACGAUGAAUAACCUGGUUGAGAAUGGCAUAGG-GCCACUCAAUGCUAAGCCCUUGGGUAUUGGUUGUUAAUGA-------------AAG
((((.(((((((.(((((....))---)))..((((..........((((((..((((.....-)))))))))).....(((....))))))))))))))))))-------------... ( -23.90)
>DroYak_CAF1 22347 97 + 1
GUCGAUGACAAUGAUCAUCCUGAU---GAUGACGAUGAUUAAUCUAUCUGAAAAUGGUAU-------ACUCAAUGUUAAGUCCUUGGGUAUUGAUCGUUAAUGA-------------AAG
(((...)))((((((((.((..(.---(((((((.(((.((..((((......))))..)-------).))).))))..))).)..))...)))))))).....-------------... ( -20.70)
>consensus
GUCGAUGACAGUGAUCAUCCUGAU___GAUGAUGAUGAAUAAUCUGACUGAGGAUGGCAUAGGGGCCACUCAAUGUUAAGCCCUUGGGUGUUGAUUGUUAUUGGCUCCUGU_UU___AAG
((((((((((((.(.(((((.............(((.....)))....((((..((((......)))))))).............))))).).))))))))))))............... (-18.72 = -21.24 +   2.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:44 2006