Locus 10306

Sequence ID 3R_DroMel_CAF1
Location 27,636,081 – 27,636,194
Length 113
Max. P 0.832768
window16407

overview

Window 7

Location 27,636,081 – 27,636,194
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 95.27
Mean single sequence MFE -17.77
Consensus MFE -16.19
Energy contribution -16.08
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -2.15
Structure conservation index 0.91
SVM decision value 0.72
SVM RNA-class probability 0.832768
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27636081 113 + 27905053
ACAUUUUAGCAUUCCAUUUUUAUAGUUUCGCUGUAACAUAGAAAAGGCAUAGAUGUUUUCUCAACAAAGCUACCACUUCAAAACCAACUGUGCAUUUUUUAUACUGUUCAACA
.......((((........((((((.....)))))).((((((((.((((((.((((.....))))(((......))).........)))))).))))))))..))))..... ( -16.40)
>DroSec_CAF1 16361 112 + 1
ACAUUUUAGCAUUCCACUUUUAUAGUUUCGCUGUAACAUAGAAAAUGCAUAGAUGUUUUCCCAACAAAGCUACUACUCCAAAACCAACUGUGCAUUU-UUAUACUGUUCAACA
.......((((........((((((.....))))))....((((((((((((..(((((....................)))))...))))))))))-))....))))..... ( -17.25)
>DroSim_CAF1 15579 112 + 1
ACAUUUUAGCAUUCCAUUUUUAUAGUUUCGCUAUAACAUAGAAAAUGCAUAGAUGUUUUCCCAACAAAGCUACUACUCCAAAACCAACUGUGCAUUU-UUAUACUGCUCAACA
.......((((........((((((.....))))))....((((((((((((..(((((....................)))))...))))))))))-))....))))..... ( -19.65)
>consensus
ACAUUUUAGCAUUCCAUUUUUAUAGUUUCGCUGUAACAUAGAAAAUGCAUAGAUGUUUUCCCAACAAAGCUACUACUCCAAAACCAACUGUGCAUUU_UUAUACUGUUCAACA
.......((((........((((((.....)))))).((((.((((((((((..(((((....................)))))...)))))))))).))))..))))..... (-16.19 = -16.08 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:42 2006