Locus 10305

Sequence ID 3R_DroMel_CAF1
Location 27,629,025 – 27,629,134
Length 109
Max. P 0.736476
window16406

overview

Window 6

Location 27,629,025 – 27,629,134
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -36.69
Consensus MFE -26.54
Energy contribution -27.02
Covariance contribution 0.48
Combinations/Pair 1.35
Mean z-score -1.34
Structure conservation index 0.72
SVM decision value 0.44
SVM RNA-class probability 0.736476
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27629025 109 - 27905053
CAGGACUUCAGUGCCCGCAGCACCGACGAGGACCAGGUAAUGCUGGCCUUCUUUGACACUUUGGUGCAGCACGAGCUUGAGUCCUGGAGCACUGUGGACAAUCAGAACA
((((((((.(((....((.(((((((((((((((((......))))...)))))).....))))))).))....))).)))))))).....(((........))).... ( -38.60)
>DroPse_CAF1 9358 109 - 1
CAGGACUUUAGCUCCUGCGACACUGACGAGGACCAGGCGAUGCUGGCCUUCUUCGAUACUUUGGUGCAACGGGAGCUGGAAUCCUGGAACACCAAUGGCAAUCAUACGA
(((((.(((((((((((...(((..(((((((..((((.......)))))))))).....)..)))...))))))))))).)))))....................... ( -41.00)
>DroEre_CAF1 9065 109 - 1
CAAGACUUCACUGCCCGCAACACCGACGAGGACCAGGUGAUGCUGGCCUUCUUCGACACUUUGGUGCAGCGCGAGCUGGAGUCGUGGAGCACCAUGGACAAUCAAAACA
...(((((((..((((((..((((((((((((((((......))))...)))))).....))))))..))).).)))))))))((((....)))).............. ( -35.60)
>DroWil_CAF1 9138 109 - 1
CAGGACUUUACCAGUCGUAAUACAGAUGAAGAUCAGGUCAUGUUGGCCUUCUUUGAUACCUUGGUGCAACGUGAAUUGGAGACUUGGAACACUACAGGCAAUAAUACGA
..((......))..(((((.............((((.(((((((((((..............))).)))))))).)))).(.((((........))))).....))))) ( -22.24)
>DroAna_CAF1 9423 109 - 1
CAGGACUUCAGUGCUCGCAACACGGAGGAGGACCAGGUGAUGCUAGCUUUCUUCGACACUUUGGUGCAACGUGAGCUGGAGUCCUGGAGCACUUUGGACAACCAGAGCU
((((((((((..((((((....(((((((((.(.((......)).)))))))))).(((....)))....)))))))))))))))).....((((((....)))))).. ( -44.50)
>DroPer_CAF1 9378 109 - 1
CAGGACUUUAGCUCUUGCGACACUGACGAGGACCAGGCGAUGCUGGCCUUCUUCGAUACUUUGGUGCAACGGGAGCUGGAAUCCUGGAACACCAAUGGCAAUCAUACGA
(((((.(((((((((((...(((..(((((((..((((.......)))))))))).....)..)))...))))))))))).)))))....................... ( -38.20)
>consensus
CAGGACUUCAGCGCCCGCAACACCGACGAGGACCAGGUGAUGCUGGCCUUCUUCGACACUUUGGUGCAACGCGAGCUGGAGUCCUGGAACACCAUGGACAAUCAUACCA
((((((((((((.(.((...((((((((((((..((((.......)))))))))).....))))))...)).).))))))))))))....................... (-26.54 = -27.02 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:41 2006