| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,620,379 – 27,620,470 |
| Length | 91 |
| Max. P | 0.999207 |
| Location | 27,620,379 – 27,620,470 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.89 |
| Mean single sequence MFE | -39.70 |
| Consensus MFE | -33.86 |
| Energy contribution | -34.10 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.85 |
| SVM decision value | 3.43 |
| SVM RNA-class probability | 0.999207 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27620379 91 + 27905053 AGUGUGCGAGUCUCGUGGGCCAAAGGCGAAAAAAACGCUGUUCGGUGGCGGGAAGAAAUUACAGCUGCCGCCGCACAGCUGCUCGCCGCGG .(((.((((((.......(((...))).........(((((.(((((((((.((....))....))))))))).))))).))))))))).. ( -41.50) >DroSec_CAF1 294 87 + 1 AGUGUGCGAGUCUCGUGGGCCAAAGGCGAAA-AAACGCUGUUCGGUGGCGGGAAGAAAUUACAGCUGCCGCCGAACAGCUGCUCG---CGG ....(((((((.......(((...)))....-....(((((((((((((((.((....))....))))))))))))))).)))))---)). ( -42.50) >DroSim_CAF1 298 87 + 1 AGUGUGCGAGUCUCGUGGGCCAAAGGCGAAA-AAACGCUGUUCGGUGGCGGGAAGAAAUUACAGCUGCCGCCGCACAGCUGCUCG---CGG ....(((((((.......(((...)))....-....(((((.(((((((((.((....))....))))))))).))))).)))))---)). ( -38.10) >DroEre_CAF1 310 89 + 1 AGUGUGCGAGUCUCGUGGGCCAAAGGCA-AA-AAACGCUGUUCGGUGGCGGGAAGAAAUUACAGCUGCCGCCGCACAGCUGCUCGCAGCGG .((.(((((((...((..(((...))).-..-..))(((((.(((((((((.((....))....))))))))).))))).))))))))).. ( -39.80) >DroYak_CAF1 296 89 + 1 AGUGUGCGAGUCUCGUGGGCCAAAGGCA-AA-AAACGCUGUUUGGUGGCGGGAAGAAAUUACAGCUGCCGCCGCACAGCUGCUCGCCUCGG .(.(.((((((...((..(((...))).-..-..))(((((.(((((((((.((....))....))))))))).))))).))))))).).. ( -36.60) >consensus AGUGUGCGAGUCUCGUGGGCCAAAGGCGAAA_AAACGCUGUUCGGUGGCGGGAAGAAAUUACAGCUGCCGCCGCACAGCUGCUCGC__CGG .....((((((.......(((...))).........(((((.(((((((((.............))))))))).))))).))))))..... (-33.86 = -34.10 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:37 2006