Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,219,473 – 3,219,573 |
Length | 100 |
Max. P | 0.980760 |
Location | 3,219,473 – 3,219,573 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 97.70 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -29.03 |
Energy contribution | -29.27 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.26 |
Structure conservation index | 0.95 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3219473 100 + 27905053 AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGGAGCUUUGGGCCCCCACCCGCAUUU .........((((((.(((((.((....))......(((((((((....))).......)))))).))))).((((.((.....)))))).))))))... ( -32.11) >DroSec_CAF1 44194 100 + 1 AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGGAGCUUUGGGCCCCCACCCGCAUUU .........((((((.(((((.((....))......(((((((((....))).......)))))).))))).((((.((.....)))))).))))))... ( -32.11) >DroSim_CAF1 45556 100 + 1 AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGGAGCUUUGGGCCCCCACCCGCAUUU .........((((((.(((((.((....))......(((((((((....))).......)))))).))))).((((.((.....)))))).))))))... ( -32.11) >DroEre_CAF1 38521 98 + 1 AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGCAGCUUUGGGCCCCCACUCGCAU-- .......((.((((..(((((.((....))......(((((((((....))).......)))))).))))).((((........))))))))..))..-- ( -26.21) >DroYak_CAF1 28846 100 + 1 AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGGAGCUUUGGGCCCCCACCCGGAUUG .(((((((..(((((..((((((...((................))...))))))......(((((((((.....)))))))))...)))))))))))). ( -29.59) >consensus AAGUUUGGCUGUGGGACGAGCAGCAAACGUAACAUAUUGACACAGUAAACUGCUUAGAUUGUCAAAGUUCGAGGGGAGCUUUGGGCCCCCACCCGCAUUU .........((((((.(((((.((....))......(((((((((....))).......)))))).))))).((((.((.....)))))).))))))... (-29.03 = -29.27 + 0.24)
Location | 3,219,473 – 3,219,573 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 97.70 |
Mean single sequence MFE | -28.55 |
Consensus MFE | -28.31 |
Energy contribution | -28.35 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.58 |
Structure conservation index | 0.99 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3219473 100 - 27905053 AAAUGCGGGUGGGGGCCCAAAGCUCCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU .....((((.((((((.....))))))))))(((.(((((.......((((....)))))))))...)))..((((((((.........))).))))).. ( -29.11) >DroSec_CAF1 44194 100 - 1 AAAUGCGGGUGGGGGCCCAAAGCUCCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU .....((((.((((((.....))))))))))(((.(((((.......((((....)))))))))...)))..((((((((.........))).))))).. ( -29.11) >DroSim_CAF1 45556 100 - 1 AAAUGCGGGUGGGGGCCCAAAGCUCCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU .....((((.((((((.....))))))))))(((.(((((.......((((....)))))))))...)))..((((((((.........))).))))).. ( -29.11) >DroEre_CAF1 38521 98 - 1 --AUGCGAGUGGGGGCCCAAAGCUGCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU --..(((((..(((((........)))).(((((..(((((......((((....)))).......))))).))))))..)))))............... ( -26.22) >DroYak_CAF1 28846 100 - 1 CAAUCCGGGUGGGGGCCCAAAGCUCCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU .....((((.((((((.....))))))))))(((.(((((.......((((....)))))))))...)))..((((((((.........))).))))).. ( -29.21) >consensus AAAUGCGGGUGGGGGCCCAAAGCUCCCCUCGAACUUUGACAAUCUAAGCAGUUUACUGUGUCAAUAUGUUACGUUUGCUGCUCGUCCCACAGCCAAACUU .....((((.((((((.....))))))))))(((.(((((.......((((....)))))))))...)))..((((((((.........))).))))).. (-28.31 = -28.35 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:48 2006