| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,606,467 – 27,606,564 |
| Length | 97 |
| Max. P | 0.930461 |
| Location | 27,606,467 – 27,606,564 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -14.02 |
| Energy contribution | -14.22 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27606467 97 - 27905053 GAAAAUGUAAUAAUCAUAAUUUAAAACUUAAACUUACUUAA-UACACUUUUAAA----GCAGAAAACUCACCUGGAACGCCUCGAAGAGGUGAUCCAGUUGC ((((.((((.(((......((((.....)))).....))).-)))).))))...----(((((....))..(((((.((((((...)))))).))))).))) ( -17.50) >DroSec_CAF1 8277 96 - 1 GAAAAUGUAAUAAUCAUAAUUAAAAACU-AAAUGUACUUAA-UGCAUUUUUAAA----GCCGACAACUUACCUGGAACGCCUCGAAGAGGUGAUCCAGUUGC (((((((((.(((..(((.(((.....)-)).)))..))).-)))))))))...----.............(((((.((((((...)))))).))))).... ( -22.40) >DroSim_CAF1 8341 96 - 1 GAAAAUGUAAUAAUCAUAAUUUAAAACU-AAAUGUACUUAA-UACAUUUUUAAA----GCCGACAACUCACCUGGAACGCCUCGAAGAGGUGAUCCAGUUGC (((((((((.(((.....(((((....)-))))....))).-)))))))))...----..........((.(((((.((((((...)))))).))))).)). ( -23.60) >DroEre_CAF1 8452 96 - 1 GAAUAUGUAUGAAUCAAAAUUUAAAACU-AAAUGUACAUAA-UACAUUUUAAUA----GCAGAAAACUCACCUGGAACGCCUCGAAGAGGUGGUCCAGUUGU .((.((((((........(((((....)-)))).......)-))))).))....----..........((.(((((.((((((...)))))).))))).)). ( -20.76) >DroYak_CAF1 8358 96 - 1 GAAAAUGUAUGAAUCAAAAUUGAAAACU-AUAUGUACUUAA-UAAAUGUUAAUA----GCAGAAAACUCACCUGGAACGCCUCGAAGAGGUGGUCCAGUUGC ............................-...(((..((((-(....)))))..----))).......((.(((((.((((((...)))))).))))).)). ( -17.80) >DroPer_CAF1 10817 88 - 1 -AAAACGCACAC---AGA-----AUAAU-AAAUG----CGAAUCCCGUUUGAUAUUUCGCUUGAGUCUCACCUGAAACGCCUCGAAGAGAUGAUCCAGCUGU -....((((...---...-----.....-...))----))......(((.((((((((..(((((((......)).....))))).))))).))).)))... ( -12.94) >consensus GAAAAUGUAAUAAUCAUAAUUUAAAACU_AAAUGUACUUAA_UACAUUUUUAAA____GCAGAAAACUCACCUGGAACGCCUCGAAGAGGUGAUCCAGUUGC ....................................................................((.(((((.((((((...)))))).))))).)). (-14.02 = -14.22 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:31 2006