Locus 10292

Sequence ID 3R_DroMel_CAF1
Location 27,594,663 – 27,594,783
Length 120
Max. P 0.851247
window16388

overview

Window 8

Location 27,594,663 – 27,594,783
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.44
Mean single sequence MFE -36.68
Consensus MFE -31.69
Energy contribution -30.63
Covariance contribution -1.06
Combinations/Pair 1.22
Mean z-score -1.99
Structure conservation index 0.86
SVM decision value 0.79
SVM RNA-class probability 0.851247
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27594663 120 + 27905053
CAUCCAACUCAUCUGCUUUCUGGCCAUGGAGGUGCCCCAUUGUGCGACUUACUUUGCUAUUUUGUGUUUCUCUGGCCAAAAUACGGAAAGUGGCAAGGCAGAAAACAUAAAUGAUUUUAC
...........((((((((.((((((.(((((..(........((((......))))......)..))))).))))))...(((.....)))..)))))))).................. ( -29.64)
>DroSec_CAF1 875 120 + 1
CAGCCAACUCAUCUGCUUUCUGGCCAUGGAGGUGCCCCAUUGUGCGCCUCAUUUUGCUAUUUUGUGUUUCUCUGGCCAAAACGCGGAAAGUGGCAAGGCAGAAAACAUAAAUGGUUUUAC
.(((((.....((((((((...(((((.(((((((........))))))).((((((..(((((.(((.....)))))))).)))))).))))))))))))).........))))).... ( -37.44)
>DroSim_CAF1 5019 120 + 1
CAGCCAACUCAUCUGCUUUCUGGCCAUGGAGGUGCCCCAUUGUGCGCCUCAUUUUGCUAUUUUGUGUUUCUCUGGCCAAAAUGCGGAAAGUGGCAAGGCAGAAAACAUAAAUGGUUUUAC
.(((((.....((((((((...(((((.(((((((........))))))).((((((.((((((.(((.....))))))))))))))).))))))))))))).........))))).... ( -40.14)
>DroYak_CAF1 6160 120 + 1
CAGCCAACUCAUCUGCUUUUUGGCCAUGGAGGUGCCCCAUUGUGCGCCUCAUUUUGCUAUUUUGUGUUUCUCUGGCCAAAACGCGAGAAGUGGCAAGGUAUGAAACAUAAAUGGUUUUAC
..((((.((..((.((.(((((((((..(((((((........))))))).....((......)).......))))))))).))))..))))))......((((((.......)))))). ( -39.50)
>consensus
CAGCCAACUCAUCUGCUUUCUGGCCAUGGAGGUGCCCCAUUGUGCGCCUCAUUUUGCUAUUUUGUGUUUCUCUGGCCAAAACGCGGAAAGUGGCAAGGCAGAAAACAUAAAUGGUUUUAC
........((((.((.((((((.((...(((((((........)))))))...((((((((((((((((.........)))))))))..))))))))))))))).))...))))...... (-31.69 = -30.63 +  -1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:24 2006