Locus 10291

Sequence ID 3R_DroMel_CAF1
Location 27,594,344 – 27,594,463
Length 119
Max. P 0.730320
window16387

overview

Window 7

Location 27,594,344 – 27,594,463
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.45
Mean single sequence MFE -38.95
Consensus MFE -32.22
Energy contribution -32.35
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.83
Structure conservation index 0.83
SVM decision value 0.42
SVM RNA-class probability 0.730320
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27594344 119 - 27905053
GGUACAUCGUCGCGGAAUAGCUGAGGAUGUGGAGUUUUGCAUAAGCCAGCCGAGUUAGCCGGUUAGCACC-CAAAGGCUAAAGUUGGCUGCAGAAUGCCAGCAUGAAUGUGUCUUUUUAU
...(((((.((((......)).)).)))))((.((((((((...((((((....(((((((((....)))-....)))))).)))))))))))))).)).((((....))))........ ( -39.80)
>DroSec_CAF1 568 113 - 1
GGCACAUCGUCGCGGACUAGCUGAGGAUGUGGAGUUUUGCAUAAGCCAGCCGAGU-----GG-UAGCACC-CAAAGGCUAAAGUUUGCUGUAGAAUGCCAGCAUGAAUGUGUCUUUUUAU
((((((((.((((......)).)).)((((((.(((((((((((((.((((...(-----((-......)-))..))))...))))).)))))))).))).)))..)))))))....... ( -35.90)
>DroSim_CAF1 4706 115 - 1
GGCACAUCGUCGCGGAAUAGCUGAGGAUGUGAAGUUUUGCAUAAGCCAGCCGAGU-----GGUUAGCACCCCAAAGGCUAAAGUUGGCUGCAGAAUGCCAGCAUGAAUGUGUCUUUUUAU
((((((((.((((......)).)).)))))...((((((((...(((((((...(-----((........)))..)))......))))))))))))))).((((....))))........ ( -36.20)
>DroYak_CAF1 5856 114 - 1
GGCACAUCAUCGCGGACUGGCUGAGGAUGCGGAGUUUUGCAUAAGCCAGCCGAGU-----GGUUAGCACC-CAAAGGCUAAAGUUGGCUGCAGAAUGCCAGCAUGAAUGUGUCUUUUUAU
((((((((((..(((.((((((....((((((....)))))).)))))))))...-----..(((((...-.....))))).((((((........))))))))).)))))))....... ( -43.90)
>consensus
GGCACAUCGUCGCGGAAUAGCUGAGGAUGUGGAGUUUUGCAUAAGCCAGCCGAGU_____GGUUAGCACC_CAAAGGCUAAAGUUGGCUGCAGAAUGCCAGCAUGAAUGUGUCUUUUUAU
((((((((.((((......)).)).)))))...((((((((...((((((..(((.....((......))......)))...))))))))))))))))).((((....))))........ (-32.22 = -32.35 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:23 2006