Locus 10290

Sequence ID 3R_DroMel_CAF1
Location 27,593,659 – 27,593,754
Length 95
Max. P 0.808815
window16386

overview

Window 6

Location 27,593,659 – 27,593,754
Length 95
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 80.73
Mean single sequence MFE -26.63
Consensus MFE -20.07
Energy contribution -20.30
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.75
SVM decision value 0.64
SVM RNA-class probability 0.808815
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27593659 95 + 27905053
AAGACUUGACUUCAAUAACUGUGUAGCCGCACUACCUGCACUGUGGCCAAACAAACACCCAGCUCUUGGAGGUGAGUGGUCUCCGCUCCUCCUCC----------
((((.(((....)))....(((...((((((..........))))))...)))..........))))(((((.((((((...))))))..)))))---------- ( -26.20)
>DroSim_CAF1 4005 91 + 1
AAGACUUGACUUCAAUAACUGUGUAGUCGCACUACCUGCACUAUGGCCAA----ACACCCAGCUCUUGGAGGUGAGUGGUCUCCGCUCCUCCUCC----------
((((.(((............((((((.........))))))..((.....----.))..))).))))(((((.((((((...))))))..)))))---------- ( -24.40)
>DroYak_CAF1 5142 92 + 1
AGGAUUGGACUUCAAUAACUGUGUAGCCGCAC---------UAUGGCCAA----ACAUCCAGCUCUUGGAGGUGAGUGGUCUCCGCUCCUCCUCCACCUCCUCCU
(((((((((..........(((...((((...---------..))))...----))))))))....((((((.((((((...))))))..))))))..))))... ( -29.30)
>consensus
AAGACUUGACUUCAAUAACUGUGUAGCCGCACUACCUGCACUAUGGCCAA____ACACCCAGCUCUUGGAGGUGAGUGGUCUCCGCUCCUCCUCC__________
((((.(((............((((....))))..........(((..........))).))).))))(((((.((((((...))))))..))))).......... (-20.07 = -20.30 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:22 2006