Locus 10289

Sequence ID 3R_DroMel_CAF1
Location 27,592,599 – 27,592,719
Length 120
Max. P 0.869731
window16385

overview

Window 5

Location 27,592,599 – 27,592,719
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.67
Mean single sequence MFE -32.40
Consensus MFE -28.39
Energy contribution -28.62
Covariance contribution 0.23
Combinations/Pair 1.13
Mean z-score -2.36
Structure conservation index 0.88
SVM decision value 0.86
SVM RNA-class probability 0.869731
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27592599 120 + 27905053
AGUCGGCUUAGCCGGGCCUAAACCGAACUGAAACUCAUUAUGCCUCUGUGUGUGCGUGCGUAAUUGUUAUGACACAAUAAUUGGGCCAGCAAUAGCAAAACAAAGCCGAAAUAAAAAUAA
..(((((((.....(((((((...((........))............(((((.((((((....)).)))))))))....))))))).((....))......)))))))........... ( -30.20)
>DroSim_CAF1 2937 120 + 1
AGUCGGCUUAGCCCGGCCCAAACCGAACCGAAACUCAUUAUGCCUCCGUGUGUGCGUGCGUAAUUGUUAUGACACUAUAAUUGGGCCAGCAAUAGCAAAACAAAGCCGAAACAAAAAUAA
..(((((((.....(((((((.......((.(((..(((((((...(((....))).))))))).))).)).........))))))).((....))......)))))))........... ( -32.79)
>DroYak_CAF1 4100 115 + 1
AGUCGGCUUAGCCAGGCC-----CGAACCAAAACUCAUUAUGCCUCCGUGUGAGCGUGCGUAAUUGUUAUGACACUAUAAUUGGGCCAGCAAUAGCAAAACAAAGCCGAAACACAAACAA
..(((((((.....((((-----(((.......(((((.(((....)))))))).(((((((.....)))).))).....))))))).((....))......)))))))........... ( -34.20)
>consensus
AGUCGGCUUAGCCAGGCC_AAACCGAACCGAAACUCAUUAUGCCUCCGUGUGUGCGUGCGUAAUUGUUAUGACACUAUAAUUGGGCCAGCAAUAGCAAAACAAAGCCGAAACAAAAAUAA
..(((((((.....(((((((.......((.(((..(((((((...(((....))).))))))).))).)).........))))))).((....))......)))))))........... (-28.39 = -28.62 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:22 2006