| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 27,590,418 – 27,590,538 |
| Length | 120 |
| Max. P | 0.721358 |
| Location | 27,590,418 – 27,590,538 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -46.43 |
| Consensus MFE | -42.33 |
| Energy contribution | -43.33 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.721358 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 27590418 120 + 27905053 GGGAAGAGUUGAGUAGAGUAGAGUGGAGUGAAUUUGGUUGCUUCCGAGUGGGGAACCAGCGACUGAAUGCAUCUCCACGGCCAGCAGAGCCACUCUUUAUACCCGCCGGUGCUCAGCUGC ......(((((((((((((...((((((((.(((..(((((((((......)))...))))))..))).)).))))))((((....).))))))))....(((....))))))))))).. ( -47.50) >DroSim_CAF1 787 120 + 1 GGGAAGAGUUGAGUAGAGUAGAGUGGAGUGAAUUUGGUUGCUUCCGAGUGGGGAACCAGCGACUGAAUGCAUCUCCACGGCCAGCAGAGCCACUCUUUAUACCCGCCGGUGCUCAGCUGC ......(((((((((((((...((((((((.(((..(((((((((......)))...))))))..))).)).))))))((((....).))))))))....(((....))))))))))).. ( -47.50) >DroYak_CAF1 1901 117 + 1 GGGAAGAGUUGAGUAGAGUAGAGUGGAGUGAAUUUGGUUGCUUCCGAGUGGGGAACCAGCGACUGAAUGCAUCUCCACCGCCAGCAGAGCCACUCUUUAUACCCGCUGGUGCUCAG---C .......(((((((......(.((((((((.(((..(((((((((......)))...))))))..))).)).)))))))((((((((((...))))........))))))))))))---) ( -44.30) >consensus GGGAAGAGUUGAGUAGAGUAGAGUGGAGUGAAUUUGGUUGCUUCCGAGUGGGGAACCAGCGACUGAAUGCAUCUCCACGGCCAGCAGAGCCACUCUUUAUACCCGCCGGUGCUCAGCUGC ......(((((((((((((...((((((((.(((..(((((((((......)))...))))))..))).)).))))))((((....).))))))))....(((....))))))))))).. (-42.33 = -43.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:21 2006