Locus 10286

Sequence ID 3R_DroMel_CAF1
Location 27,569,750 – 27,569,851
Length 101
Max. P 0.541594
window16381

overview

Window 1

Location 27,569,750 – 27,569,851
Length 101
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 78.42
Mean single sequence MFE -23.29
Consensus MFE -15.62
Energy contribution -16.50
Covariance contribution 0.88
Combinations/Pair 1.17
Mean z-score -1.49
Structure conservation index 0.67
SVM decision value 0.02
SVM RNA-class probability 0.541594
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27569750 101 + 27905053
ACUUAAUUCACUGCCCC-UAAUGUCAGCAUUAAUGCAAAUUCCUGAUGGCAAUUCCAUCUCCGAGCUCUGAGCUGCAGAGCGGCUUGAAUCCACAC-----AUACUG
.....(((((..(((..-.....((.(((....)))........(((((.....)))))...))((((((.....))))))))).)))))......-----...... ( -24.60)
>DroSec_CAF1 401 101 + 1
ACUUCAUUCACUGCCCC-UAAUGUCAGCAUUAAUGCUGGCUCCUGAUGGCAAUUCCAUCUCCAAGUUCUGAGCUGCAGAGCGGCUUGAAUCCCCAC-----GUGCUG
.....(((((..(((..-....(((((((....)))))))....(((((.....))))).....((((((.....))))))))).)))))......-----...... ( -29.00)
>DroSim_CAF1 401 88 + 1
ACUUCAUUCACUGCCCC-UAAUGCCAGCAUUAA-------------UGGCAAUUCCAUCUCCAAGUUCUGAGCUGCAGAGCGGCUUGAAUCCCCAC-----GUGCUG
.....(((((..(((..-...(((((.......-------------))))).............((((((.....))))))))).)))))......-----...... ( -21.50)
>DroEre_CAF1 403 107 + 1
ACCUCAUUCACUGCCCCUUAGUAUCAGCAUUAUAGCAAAUUCCAGAAGGCAAUUCCAUCUUCAAGUUCUGAGCUGCAGAGCGGCUUGGUUCCCUUUUAUUACUAUUA
..................(((((...((......))........(((((........)))))..(..(..((((((...))))))..)..)........)))))... ( -18.90)
>DroYak_CAF1 409 107 + 1
ACCUCAUUUACUGCCCCUUAAUGUCAGCAUUAUUGCAAAUUCCUGAAGGCAAUUCCAUCUUUAAGUUCUGAGCUGCAGUGCGGCUCGGAUCCCUAUUAUUAUUAUUA
...........((((.......((..(((....)))..)).......))))...............((((((((((...)))))))))).................. ( -22.44)
>consensus
ACUUCAUUCACUGCCCC_UAAUGUCAGCAUUAAUGCAAAUUCCUGAUGGCAAUUCCAUCUCCAAGUUCUGAGCUGCAGAGCGGCUUGAAUCCCCAC_____GUACUG
.....(((((..(((...(((((....)))))............(((((.....))))).....((((((.....))))))))).)))))................. (-15.62 = -16.50 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:18 2006