Locus 10284

Sequence ID 3R_DroMel_CAF1
Location 27,565,908 – 27,566,002
Length 94
Max. P 0.837767
window16379

overview

Window 9

Location 27,565,908 – 27,566,002
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.74
Mean single sequence MFE -16.16
Consensus MFE -14.82
Energy contribution -14.58
Covariance contribution -0.24
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.92
SVM decision value 0.74
SVM RNA-class probability 0.837767
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27565908 94 + 27905053
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACAUUGGCAUGCUACCUCCCCGAGUACGGAAACCACCCACUUU
.....(((((.((((((.....)))))).....................((.....)).)))))......(((....))).............. ( -15.90)
>DroSec_CAF1 84020 94 + 1
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACAUUGGCAUGCUACAUCCCUGACUCCGGAAACCACCCACUUU
.....(((((.((((((.....)))))).....................((.....)).)))))...(((........)))............. ( -14.90)
>DroSim_CAF1 85128 94 + 1
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACAUUGGCAUGCUACCUCCCCGAGUCCGGAAACCACCCACUUU
.....(((((.((((((.....)))))).....................((.....)).)))))......(((....))).............. ( -16.30)
>DroEre_CAF1 88049 94 + 1
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACUUUGGCAUGCUACCUCCCUGCGUCCGGAAACCACCCACUUG
.....(((((.((((((.....))))))......(((..((((........))))))).)))))...(((........)))............. ( -16.50)
>DroYak_CAF1 86324 94 + 1
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACAUUGGCAUGCUGCCUCCCUGCGACCGGAAACCACCCACUUU
....((((((.((((((.....)))))).....................((.....)).))))))..(((........)))............. ( -17.20)
>consensus
CCCACAGCAUACAGACGUCACUCGUCUGCACCACCCAUUAAGUUCAGACCCACAUUGGCAUGCUACCUCCCUGAGUCCGGAAACCACCCACUUU
.....(((((.((((((.....)))))).....................((.....)).)))))......(((....))).............. (-14.82 = -14.58 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:16 2006