Locus 10283

Sequence ID 3R_DroMel_CAF1
Location 27,565,056 – 27,565,164
Length 108
Max. P 0.578981
window16378

overview

Window 8

Location 27,565,056 – 27,565,164
Length 108
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 88.98
Mean single sequence MFE -27.44
Consensus MFE -23.02
Energy contribution -22.70
Covariance contribution -0.32
Combinations/Pair 1.14
Mean z-score -1.37
Structure conservation index 0.84
SVM decision value 0.09
SVM RNA-class probability 0.578981
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27565056 108 + 27905053
GCCGAUGCUUUUGGCCAUUUCCCUU-UGAAUUUUCUUCCACCGUGCUGCGAAAGCUGCCAAAUUUCGGCAUUUCGACAUUUGGCUUUAAUUGAAAUCCGUUUGGGUGUG
(((((.....)))))(((..(((..-.....((((............((....)).(((((((.((((....)))).))))))).......)))).......))).))) ( -29.04)
>DroSec_CAF1 83164 109 + 1
GCCGAUGCUUUUGGCCAUUUCCCUUUUCAAUUUUCUUUUACCGUGCUGCGAAAGCUGCCAAAUUUCGGCAUUUCGACAUUUGGCUUUAAAUGAAAUCCGUUUGUGUGUG
(((((.....)))))(((......(((((..................((....)).(((((((.((((....)))).)))))))......))))).......))).... ( -25.42)
>DroSim_CAF1 84268 109 + 1
GCCGAUUCUUUUGGCCAUUUCCCUUUUCAAUUUUCUUCUACCGUGCUGCGAAAGCUGCCAAAUUUCGACAUUUCGACAUUUGGCUUUAAAUGAAAUCCGUUUGUGUGUG
(((((.....)))))(((......(((((..................((....)).(((((((.((((....)))).)))))))......))))).......))).... ( -26.32)
>DroEre_CAF1 87193 108 + 1
GCCGAUGCUUUUGGCCAUUUCCCGUUGAAUUUCUACUUCACCGUGCUGCGAAAGCUGCCAAAUUUCGCCAUUUCGACAUUUGGCUU-GGGUGAAAUCCGCUUGUGUGUG
(((((.....))))).....................((((((.....((....)).(((((((.(((......))).)))))))..-.))))))...(((....))).. ( -30.60)
>DroYak_CAF1 85459 106 + 1
GCCGAUGCUUUUGGCCAUUUCCCGUUGAAUUUCUAUUUCACCGUCCUGCGAAAGCUGCCAAAUUUCGCCAUUUCGACAUUUGGCUU-GAAUGAAAUCGUUUU--GUGUG
(((((.....)))))(((.......(((.((((...((((.......((....)).(((((((.(((......))).))))))).)-))).)))))))....--..))) ( -25.82)
>consensus
GCCGAUGCUUUUGGCCAUUUCCCUUUUAAAUUUUCUUUCACCGUGCUGCGAAAGCUGCCAAAUUUCGCCAUUUCGACAUUUGGCUUUAAAUGAAAUCCGUUUGUGUGUG
(((((.....)))))(((((...........................((....)).(((((((.(((......))).)))))))...)))))................. (-23.02 = -22.70 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:15 2006