Locus 10281

Sequence ID 3R_DroMel_CAF1
Location 27,558,489 – 27,558,581
Length 92
Max. P 0.728711
window16374

overview

Window 4

Location 27,558,489 – 27,558,581
Length 92
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 79.27
Mean single sequence MFE -19.88
Consensus MFE -16.02
Energy contribution -17.65
Covariance contribution 1.63
Combinations/Pair 1.07
Mean z-score -1.56
Structure conservation index 0.81
SVM decision value 0.42
SVM RNA-class probability 0.728711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27558489 92 + 27905053
CAAAACAAAAUCAGUUCUGAAACACAAAAUUGAUUGUUUUAAUUCAUUUGUUUGGGAUUGGGCAAAUUCCAGUCAAGGAGCUGCUUUCCUAU--------------------
.((((((..(((((((.((.....)).)))))))))))))............(((((..(((((..((((......)))).)))))))))).-------------------- ( -20.10)
>DroSec_CAF1 76676 89 + 1
CAAAACAAAAUCAGUUCUGAAACGCAAAAUUGAUUGUUUUAAUUCAUUUGUUUGGGAUUGGGCACAUUCCAGGCAAGGAACU---AUGCUAU--------------------
.((((((..(((((((.((.....)).)))))))))))))..(((.((((((((((((.(....))))))))))))))))..---.......-------------------- ( -21.80)
>DroSim_CAF1 77784 89 + 1
CAAAACAAAAUCAGUUCUGAAACACAAAAUUGAUUGUUUUAAUUCAUUUGUUUGGGAUUGGGCACCUUCCAGGCAAGGAACU---AUGCUAU--------------------
.((((((..(((((((.((.....)).)))))))))))))..(((.(((((((((((..((...))))))))))))))))..---.......-------------------- ( -19.70)
>DroEre_CAF1 80547 107 + 1
CGAAACAAAAUCAGUUCUGAAACACAAAAUUGAUUGUUUUAAUUCCUUU-UUUGGGAAUGGG-AAAUUCCGCUCAAGCUACU---UUUGUAUUUAAUACAGCUUCAUCAAGA
.((((((..(((((((.((.....)).))))))))))))).((((((..-...)))))).((-.....))....(((((...---.(((....)))...)))))........ ( -17.90)
>consensus
CAAAACAAAAUCAGUUCUGAAACACAAAAUUGAUUGUUUUAAUUCAUUUGUUUGGGAUUGGGCAAAUUCCAGGCAAGGAACU___AUGCUAU____________________
.((((((..(((((((.((.....)).)))))))))))))......(((((((((((((.....)))))))))))))................................... (-16.02 = -17.65 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:12 2006