Locus 10280

Sequence ID 3R_DroMel_CAF1
Location 27,557,225 – 27,557,334
Length 109
Max. P 0.950858
window16373

overview

Window 3

Location 27,557,225 – 27,557,334
Length 109
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 74.96
Mean single sequence MFE -27.82
Consensus MFE -14.76
Energy contribution -17.45
Covariance contribution 2.69
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.53
SVM decision value 1.41
SVM RNA-class probability 0.950858
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 27557225 109 + 27905053
AAAAGUUAAUCCCGGGUCUGGGUCAAGGUCGUUGGGCACCCAGCACCACACCCAGAAUACCCAGCACGUCC--ACACCCUCAAAAACCAACCCGGUCACCGGUCACCCACA
.............((((((((((...(((.(((((....))))))))..)))))))...............--..................((((...))))...)))... ( -31.80)
>DroSec_CAF1 75398 102 + 1
GAAAGUUAAACCCGGGUCUGGGUCAAGGUCGUUGGGCCGCCAGCACCGCACCCCGCACACCCAGCACGUCC--ACACCCUCAAAAACCAACCCGGU-------CACCCACA
...........((((((((((((...(((.(((((....))))))))((.....))..))))))...(...--.)..............)))))).-------........ ( -29.10)
>DroSim_CAF1 76514 102 + 1
AAAAGUUAAACCCGGGUCUGGGUCAAGGUCGUUGGGCCGCCAGCACCGCACCCCGCACACCCAGCACGUCC--ACACCCUCAAAAACCAACCCGGU-------CACCCACA
...........((((((((((((...(((.(((((....))))))))((.....))..))))))...(...--.)..............)))))).-------........ ( -29.10)
>DroAna_CAF1 83883 88 + 1
AAAAGUUAAAUCCGAGUCUGGGACGAGGUCGAAGGACCCCCAGUACC----CGUGUUCUACCCGCACAUCCCUACACACUCA------------CU-------CCUACACA
.............(((((((((....((((....)))))))))....----.((((.......))))..........)))).------------..-------........ ( -21.30)
>consensus
AAAAGUUAAACCCGGGUCUGGGUCAAGGUCGUUGGGCCCCCAGCACCGCACCCCGCACACCCAGCACGUCC__ACACCCUCAAAAACCAACCCGGU_______CACCCACA
...........((((((..((((...(((.(((((....))))))))..)))).((.......))........................))))))................ (-14.76 = -17.45 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:53:11 2006